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SeqFu · FASTX tools

@seqfu.bsky.social

Fast manipulation and inspection of FASTA and FASTQ files from the bioinformaticians at the Quadram Institute https://telatin.github.io/seqfu2/

32 Followers  |  51 Following  |  1 Posts  |  Joined: 18.03.2025  |  1.516

Latest posts by seqfu.bsky.social on Bluesky

myloasm - metagenomic assembly with (noisy) long reads

Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler that I've been working on during my postdoc in the Heng Li lab (@lh3lh3.bsky.social).

myloasm-docs.github.io

28.05.2025 17:53 — 👍 131    🔁 77    💬 5    📌 3
Post image

Lmao 🤣 savages

27.03.2025 06:39 — 👍 21476    🔁 4054    💬 126    📌 238
Preview
Shebang - Pixi by prefix.dev None

Pixi has shebang support like uv now! 😍
```
#!/usr/bin/env -S pixi exec --spec bat -- bash -e
```

pixi.sh/dev/advanced...

27.03.2025 00:56 — 👍 4    🔁 1    💬 0    📌 0
Vacancy social card for a Group Leader position, seeking a scientist with a research focus on bacterial foodborne pathogens or microbial spoilage. Competitive salary and support package offered. Apply by 14 April 2025.

Vacancy social card for a Group Leader position, seeking a scientist with a research focus on bacterial foodborne pathogens or microbial spoilage. Competitive salary and support package offered. Apply by 14 April 2025.

Are you a forward-thinking scientist with expertise in bacterial foodborne pathogens or microbial spoilage? 🦠

Check out our current Group Leader vacancy ⤵️

💷 Competitive salary and support package
🗓️ Apply by 14 April 2025
➡️ buff.ly/ml6AT1G

26.03.2025 10:00 — 👍 0    🔁 1    💬 0    📌 0
Screenshot of the linux terminal running "seqfu view"

Screenshot of the linux terminal running "seqfu view"

Did you know that you can have a quick peek at FASTQ qualities with `seqfu view`?

You can pipe it to less to scroll the whole dataset:

seqfu view FILE.fastq | less -SR

#seqfuTips #bioinformatics

18.03.2025 09:53 — 👍 7    🔁 2    💬 0    📌 0

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