Laurent Guerard

Day 2 of #Zidas2025

Day 2 of #Zidas2025 is happening!

After a lecture from @ahklemm.bsky.social, it's now time for hands on with @ilastik-team.bsky.social by @benediktbest.bsky.social from Anna Kreshuk's lab and some tracking in the afternoon with #Trackmate from @jytinevez.bsky.social !

First day of #Zidas2025

And we're ON!

#Zidas2025 has officially started at the @biozentrum.unibas.ch, and the first day is introduction to image formation by Arne Seitz, Fiji by Joana Delgado Martins and Fiji scripting by me !

Obra Dinn is a very nice choice indeed!

I couldn't find a napari plug-in to open all file formats using Bioio. So I made one : pypi.org/project/napa...

Feel free to use it and suggest improvements 🎉

This summer, we are running a one-week intensive workshop on Python-based BioImage Analysis.
Are there better ways to spend 6 days in mid-July in Boston?Probably.
Would you learn as much as you will here? Probably not.

Apply here:
iac.hms.harvard.edu/bobiac/2025

My gf got a paper published discussing about evolution of a fish and got approached by creationists that didn't get the conclusion 🙃

🎉🎉

Applications are now open!

Yup, at least for Vscode. It requires an account but otherwise free and learns from your own code base, which is nice.

an airplane is taking off from a runway with a red light on the tail Alt: an airplane is taking off from a runway with a red light on the tail

?

🤩

Finally had a bit of time to play with multi-GPU deconvolution. Using @truenorth-ia.bsky.social and @haesleinhuepf.bsky.social previous work.

Here it is in action in #BigDataViewer using async and lazy processing. Look at the two poor laptop GPUs going as fast as they can:

Depends for what I guess, I'm using Codeium for coding, using the free version and I'm quite happy with it so far.

ZIDAS 2025 This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

If you're interested, check out 2025.zidas.org for more information, news about registration and our tentative program!
#ZIDAS2025

📅 Important dates:
Course will run from July 6th (Yes, Sunday!) to July 11th 2025.
Registration opens at the end of January until 2025-03-16.
You will be informed of your participation on 2025-04-07.

As is our signature, programming knowledge is not required 💻, but an eagerness to learn is welcome! What is important is your biological question and a motivating cover letter to get your application noticed!

Hands-on sessions will be dedicated to well-established open source tools ⚙📚 with an emphasis on creating reproducible workflows.

25 candidates will join our amazing group of instructors locally sourced (through SwissBIAS, and across Europe), and tool developers in order to work with modern bioimage analysis tools🏃‍♂️🏃‍♂️🏃‍♂️

After last year's ZIDAS success, we are thrilled to open the doors of the Uni Basel to a fresh new batch of candidates.

ZIDAS 2025 This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

2025 is now well underway and we are happy to announce that ZIDAS is coming to Basel this year !
2025.zidas.org

Entry-level position (80 - 100%) for bioimage analysis specialist at the Imaging Core Facility (IMCF) of the Biozentrum, University of Basel

www.biozentrum.unibas.ch/open-positio...

@unibas.ch #Biozentrum #Basel #research #science #joboffer #scientific

Come join us if you do image analysis!

sorry about that, i asked it to make sense of my life choices

If you're scared of IA taking over your job, we probably still have a few years ahead of us 😁

Ah yes thanks, sorry, I saw my name too late 😅

Core facility microscopists assemble!

I'd be happy to be in as well 🤚🏻

A screenshot showing the use of the Windows ColourSimulatons app to quickly check color blind friendly display and color usage in images. It shows one image of fluorescently stained cells while combining red, green and blue colors and another one using cyan, yellow and magenta together with the apps sliding window that simulates the color blind vision on screen. Additionally it displays the pop-up menu for the tool.

#BIAToolTip No.15

On Windows there is the ColourSimulator App which allows you to simulate on your screen with a slidable window to inspect design or images to check if those are inclusive for color deficient vision.
The #biovoxxel LUT Channels Tool provides a related functionality.

Congratulations!!

And all the best for your next adventure!

If you have no friends, but want to play Pictionary, now, you can!