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Ray Berkeley

@ray-berkeley.bsky.social

Postdoc @scripps.edu interested in protein-protein interactions and all things undruggable.

94 Followers  |  176 Following  |  4 Posts  |  Joined: 17.11.2023  |  1.8327

Latest posts by ray-berkeley.bsky.social on Bluesky

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Leaflet-specific phospholipid imaging using genetically encoded proximity sensors - Nature Chemical Biology An approach combining bioorthogonal chemistry with genetically encoded fluorogen-activating proteins enables subcellular imaging of phospholipids and glycans, as well as the visualization of lipid tra...

Very excited to share new work out today in @natchembio.nature.com on a new approach - FACES - for selectively imaging of phospholipids and other biomolecules at spatial resolutions down to individual membrane leaflets (1/n) www.nature.com/articles/s41...

15.09.2025 18:03 โ€” ๐Ÿ‘ 162    ๐Ÿ” 69    ๐Ÿ’ฌ 8    ๐Ÿ“Œ 7
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Glycopolymers stabilize protein folding and protein-protein interactions via enthalpic interactions Macromolecular crowding is ubiquitous to physiological environments, perturbing the thermodynamics and kinetics of proteins via excluded volume and nonspecific chemical interactions. While crowding ha...

Thrilled to share this manuscript from my lab where we looked at how glycopolymers that compose the glycocalyx influence protein folding and protein-protein interactions via macromolecular crowding.

TLDR: The Glycocalyx stabilizes protein folding and PPIs

www.biorxiv.org/content/10.1...

13.08.2025 17:25 โ€” ๐Ÿ‘ 38    ๐Ÿ” 11    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0
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Targeted Protein Acetylation Through Chemically Induced Proximity ConspectusProtein acetylation is a pervasive and reversible post-translational modification (PTM) that impacts various protein features including stability, localization, and interactions and regulate...

Happy to share our contribution to this special issue dedicated to "Proximity-Induced Chemical Biology". We provide our take on targeted protein acetylation.

Nice work Wesley and Roy!

pubs.acs.org/doi/10.1021/...

13.08.2025 22:32 โ€” ๐Ÿ‘ 19    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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New preprint from Daniel Du @fitzpatricklab.bsky.social shows #femtosecond light pulses can lens electron beams, promising higher contrast in #cryoET and better aberration correction in #cryoEM

tinyurl.com/257sw7j9

Experiments made possible by support from @cziscience.bsky.social #ImagingTheFuture

17.06.2025 15:38 โ€” ๐Ÿ‘ 24    ๐Ÿ” 9    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

This could be a good time to mention we are looking for a new Lab Manager / Postdoc for the biochemistry lab with expertise protein expression, purification, and protein NMR. Details to follow.

21.01.2025 15:16 โ€” ๐Ÿ‘ 12    ๐Ÿ” 7    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 3
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Research Scientist - Mass spectrometry - Ferguson Lab Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

Mass spec/proteomics chempostdoc in the Ferguson lab, UCSD, La Jolla, CA

chemsky ๐Ÿงช โš—๏ธ

jobrxiv.org/job/universi...

16.01.2025 01:34 โ€” ๐Ÿ‘ 39    ๐Ÿ” 13    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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Structural basis for the conformational protection of nitrogenase from O2 - Nature Cryo-electron microscopy of Azotobacter vinelandii FeSIIโ€“nitrogenase reveals a core complex of molybdenumโ€“iron proteins (MoFePs), iron proteins (FePs) and FeSII, in which FeSII mediates interactions with MoFeP and FeP to position their FeS clusters in catalytically inactive but O2-protected states.

Nature research paper: Structural basis for the conformational protection of nitrogenase from O2

https://go.nature.com/4aiD344

13.01.2025 20:04 โ€” ๐Ÿ‘ 31    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Awesome work from Sarah, @bcryo.bsky.social and friends in the Herzik Lab! It was cool to see this come together in such a short time.

09.01.2025 04:39 โ€” ๐Ÿ‘ 2    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

I like the inclusion of a picture the actual pond in Fig. 1A of this paper! Very serene, it sets the stage well.

17.12.2024 23:11 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Crosslinking intermodular condensation in non-ribosomal peptide biosynthesis - Nature Structural studies of tyrocidine synthetase using site-selective crosslinking probes to link condensation domains with carrier protein substrates define key interactions and molecular mechanisms of no...

Awesome application of biorthogonal chemistry to trap non-ribosomal peptide synthetase complexes for cryo-EM, out yesterday from the Burkart Lab @ucsandiego.bsky.social

www.nature.com/articles/s41...

12.12.2024 19:23 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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What do they keep in hereโ€ฆ

04.12.2024 08:52 โ€” ๐Ÿ‘ 4    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

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