Proksee

The CARD tool in Proksee has been updated to RGI v6.0.3 and CARD DB 4.0.1.

Recent Proksee updates:

• New option to download specific genome regions
• Build dates now shown for citation
• Increased sequence search results

We have added a new feedback feature to Proksee.

You can share comments, suggestions, and report issues using the Feedback button at the top of the page and elsewhere in Proksee. We would love to hear what is working well, what could be improved, and any ideas for new features or tools.

Proksee now supports NCBI assembly accessions.

You can use GCF (RefSeq) and GCA (GenBank) assembly accessions to create new projects and in analysis tools such as BLAST and FastANI.

Updated PNG Export Limit: 16,000 × 16,000

You can now download PNG images of your maps at resolutions up to 16,000 × 16,000 pixels (double the previous limit). This enables high-quality image downloads for large-format printing and detailed visual analysis.

Proksee – New Feature: Genome Sequence Search Find exact matches or flexible patterns in the genome sequence

New in Proksee: genome sequence search. 🔍

Search for exact DNA sequences or regex patterns on the map. Hover over results to highlight matches and add them as features with a click. Try it via the new “Search Sequence” button.

More info → proksee.ca/posts/40

Proksee – Updated Feature Search Enhanced search now includes saved queries and qualifier/metadata filtering.

Proksee feature search now supports qualifiers, metadata, Boolean values, and saved queries.

More info → proksee.ca/posts/39

🛠️ We’ve launched a new Status Page for Proksee!

Check it for updates on tool availability, scheduled maintenance, and outages.
Accessible from the About page, footer, or look for the new icon in the top bar.
If we're ever offline, we'll post here.

🔗 proksee.ca/status

🎉 New enhanced control over metadata for BLAST and CARD results. Choose exactly what to include in map features.

Full details 👉 proksee.ca/posts#37

The Track List Caption tool is now dynamic—captions auto-update as you add, remove, reorder, or edit tracks. We've also added numbering options starting from the backbone.

Details 👉 proksee.ca/posts#36

🦋 Proksee is now on Bluesky! 🦋
#Proksee #Bacteria #Plasmids #Mitochondia #Genomics

Proksee: in-depth characterization and visualization of bacterial genomes Abstract. Proksee (https://proksee.ca) provides users with a powerful, easy-to-use, and feature-rich system for assembling, annotating, analysing, and visu

Proksee: in-depth characterization and visualization of bacterial genomes. #Proksee #Bioinformatics #Genomics

Try it at proksee.ca! Read our paper here: