Galaxy Project

Microbiome / Tutorial List A microbiome is the community of microorganisms that can usually be found living together in any given habitat. Microbiome research has grown substantially over the past decade in terms of the range o...

🦠 Fun fact: More than 99% of microbial species can’t be cultured in a lab; metagenomics is the key to studying them!
Galaxy helps make it possible, learn how: training.galaxyproject.org/training-mat...

Transcriptomics / Reference-based RNA-Seq data analysis / Hands-on: Reference-based RNA-Seq data analysis Training material for all kinds of transcriptomics analysis.

New to RNA-seq analysis?
The Galaxy Training Network offers a hands-on tutorial that guides you from raw reads to biological insights, all from your browser.
Learn:
🔹Quality control
🔹Mapping & quantification
🔹Differential expression analysis
🔹Visualization
training.galaxyproject.org/training-mat...

GitHub - vgl-hub/rdeval: Multithreaded read analysis Multithreaded read analysis. Contribute to vgl-hub/rdeval development by creating an account on GitHub.

🔗 https://doi.org/10.1093/bioinformatics/btaf416
💻️ rdeval code: https://github.com/vgl-hub/rdeval (3/3)

🧬 As we scale up our efforts to produce high-quality reference genomes, rdeval allows users to reliably and efficiently compute, store, and visualize sequence read metrics. (2/3)

🗞️ Check out the latest manuscript from Formenti, Koo, Sollitto et al. on Bioinformatics: Evaluation of sequencing reads at scale using rdeval. (1/3)

European Galaxy Days (EGD) European Galaxy Days meeting in Autumn 2025

European Galaxy Days 2025 will take place from October 1 to 3 in Freiburg, Germany! Join the community for talks, demos, BoFs, and a collaborative CoFest. Come share, learn, and connect with Galaxy users and developers across Europe. Registration is free: galaxyproject.org/events/2025-...

Praxislabor 2025: “Galaxy: Die Open-Source-Plattform als Einstieg in Digital Humanities und Forschungsdatenmanagement” 🗣️ Workshopverantwortliche: Schneider, Daniela (Universität Freiburg) 🚩 Ort: Historikertag 2025, Universität Bonn, Senatssaal (Regina-Pacis-Weg 3, 53113 Bonn) 📆 Datum: 17.09.2025 ⌚ Uhrzeit: 08:30-10:1...

Galaxy at Historikertag 2025
Join us for a hands-on workshop introducing Galaxy as an open-source platform for digital humanities and research data management.

📅 Sept 17 | ⏰ 8:30–10:10 a.m.
📍University of Bonn, Senate Hall

digigw.hypotheses.org/6292

Galaxy at JOBIM The JOBIM conference, the annual event of the French bioinformatics and biostatistic community, brought together researchers, educators, and innovators in bioinformatics to discuss cutting-edge tools,

🇫🇷 Galaxy was at JOBIM 2025!
This year’s Journées Ouvertes en Biologie, Informatique et Mathématiques brought together the French bioinformatics community in Lille, and Galaxy was there to connect with researchers, share tools, and support open science.
Read more: galaxyproject.org/news/2025-07...

July 2025 Galaxy Newsletter From cutting-edge research to international conferences, Galaxy continues to grow. Get all the updates in this quarter's newsletter!

🗞️ The July 2025 Galaxy newsletter has arrived! It’s a celebration of everything the community has accomplished this year so far, from major events to new platform features and exciting research. Dive in and see what’s been happening across Galaxy!

galaxyproject.org/news/2025-07...

Statistics and machine learning / Foundational Aspects of Machine Learning using Python / Hands-on: Foundational Aspects of Machine Learning using Python Statistical Analyses for omics data and machine learning using Galaxy tools

🧠 New to machine learning? Start Here!
Learn to build generalizable models with scikit-learn in this Galaxy tutorial, from overfitting to real-world datasets!

Start here: training.galaxyproject.org/training-mat...

BRC Measles infographic

Register now for our upcoming Measles Bioinformatic Analysis Webinar. We hope to see you there!

Register here: https://events.teams.microsoft.com/event/26e362e7-0d72-4c6a-9e86-0fd306368dfd@24d967f1-3ed8-4448-baa6-560ec572acb3

#BRCAnalytics #UseGalaxy #BVBRC

Tawny Owl (Strix aluco) Tawny Owl from Priština, Pristina, Kosovo on November 23, 2019 by Albert Krasniqi

📷️ (1) Caroline Legg (https://www.inaturalist.org/photos/451350360)
(2) Albert Krasniqi (https://www.inaturalist.org/observations/36039724)

@vertebrategenomes.bsky.social (3/3)

🧬 The genome was sequenced and assembled at the Vertebrate Genome Lab, with assembly done on Galaxy, and annotation done by NCBI. Data available on NCBI's RefSeq: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_031877795.1/ (2/3)

Photo of a tawny owl from Caroline Legg on iNaturalist

Photo of a tawny owl in a tree from Albert Krasniqi on iNaturalist

🦉 We are excited to announce an annotated genome assembly for the tawny owl (Strix aluco), commonly found in woodlands across Europe, as well as western Siberia. Special thanks to our collaborator Tom Gilbert at the University of Copenhagen! (1/3)

YouTube video by GalaxyProject Galaxy 25.0 - Preferred Visualization Display for Datasets

Tired of opening a dataset and seeing a wall of binary?

Galaxy 25.0 now supports preferred visualizations by datatype, so formats like HDF5 open with something actually useful.

youtu.be/0Tl_bxn7dQo?...

Galaxy and Bioconducter Community Conference Meeting Report From groundbreaking research to hands-on workshops and live demos, GBCC2025 showcased the best of the Galaxy and Bioconductor communities.

GBCC2025 brought the Galaxy and Bioconductor communities together for four days of talks, training, and collaboration.

Catch up on everything that happened in the official meeting report: galaxyproject.org/news/2025-07...

Galaxy Training! Collection of tutorials developed and maintained by the worldwide Galaxy community

With over 8,000 tools available, Galaxy supports everything from standard QC to advanced machine learning and image analysis.
You don’t need 12 platforms; you need one that scales with your research.
Start your journey with the Galaxy Training Network: training.galaxyproject.org/training-mat...

SURF Research Cloud as infrastructure for Galaxy in The Netherlands Dutch scientists can now use Galaxy in secure environments.

We apologize for the broken link in the original post. To learn more, please follow this link: galaxyproject.org/news/2025-07...

🇳🇱 Galaxy is now available in the SURF Research Cloud.
Dutch researchers can launch Galaxy workspaces with configurable resources, data federation, and support for Pulsar, all in a secure, reproducible environment.
galaxyproject.org/news/2025-07...

Managing workflows in Galaxy just got easier!
Galaxy 25.0 adds bulk actions to the “My Workflows” tab:
✔️ Select multiple workflows
🗑️ Delete, restore, or tag them all at once
🏷️ New tagging interface for cleaner organization
A small update, but a big difference!
docs.galaxyproject.org/en/master/re...

Computational chemistry / Data management in Medicinal Chemistry / Hands-on: Data management in Medicinal Chemistry Modelling, simulation and analysis of biomolecular systems

Drug discovery meets data science!
This Galaxy tutorial walks you through medicinal chemistry data:
🧪Explore compound properties
🧬Cluster by similarity
📊Analyze activity

Run it all in your browser →
training.galaxyproject.org/training-mat...

Black-capped Squirrel Monkey (Saimiri boliviensis) Black-capped Squirrel Monkey from Gral. José Ballivián, Bolivia on February 2, 2022 at 08:56 AM by Luis Stevens

📸 (1) Mike Andersen https://www.inaturalist.org/observations/7803490
(2) Luis Stevens https://www.inaturalist.org/observations/109975304

@vertebrategenomes.bsky.social @alleninstitute.org (4/4)

Data available on NCBI's RefSeq:
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_048565385.1/ (3/4)

🧠 Congratulations to our collaborators at the Allen Institute for Brain Science and special thanks to the sample providers at the Keeling Center for Comparative Medicine and Research at The University of Texas MD Anderson Cancer Center! (2/4)

Mike Andersen via iNaturalist

Luis Stevens via iNaturalist

🐒 We are thrilled to announce the completion of an annotated reference assembly for the Bolivian squirrel monkey, Saimiri boliviensis! The genome was sequenced and assembled at the Rockefeller University Vertebrate Genome Lab, with assembly done on Galaxy, and annotation by NCBI 🧬 (1/4)

No infrastructure? No problem! Galaxy brings the compute to your browser.
Whether you're analyzing a handful of samples or hundreds of datasets, Galaxy scales with you.

Check us out:

usegalaxy.org

Interactive Tools just got their own space in Galaxy 25.0!

There's a brand-new panel dedicated to ITs, making it easier to launch Jupyter, RStudio, and more.

Bonus: Each IT now has its own icon. Because science deserves good design, too!

https://galaxyproject.org/events/2025-07-10-imperial-college-london-talk/

#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway (2/2)

📣 Upcoming Online Talk at Imperial College London: Discover Galaxy – From Analysis to FAIR Data Management

Learn how Galaxy supports research data analysis and FAIR data management in this online talk hosted by Imperial College London.

📍 Online
📅 10 July 2025
🔗 More info & registration: (1/2)

Love this CoFest energy!
Great to see Galaxy and Bioconductor developers working side-by-side at #GBCC2025, exploring, coding, and learning from each other 💻💙

@galaxyproject.bsky.social @bioconductor.bsky.social