Nick Banovich

Denoising image-based spatial transcriptomics data with DenoIST Image-based spatial transcriptomics (IST) technologies provide unprecedented resolution of gene expression in tissue sections, but suffer from contamination of cells' gene expression profiles due to i...

Great new work led by Aaron Kwok from @davisjmcc.bsky.social’s group. A tool to “denoise” contaminating transcripts from image based spatial data.

www.biorxiv.org/content/10.1...

SOPHiA GENETICS and Element Biosciences Unite Sequencing Power and AI Analytics to Accelerate Global Research In Precision Medicine SOPHiA GENETICS and Element announce a partnership to unite sequencing and AI analytics to streamline genomic workflows and accelerate research in precision medicine

🚀 We’re thrilled to announce our new partnership with SOPHiAGENETICS! Together, we’re redefining what’s possible in #sequencing—delivering richer insights, faster results, and greater accessibility for labs everywhere. 🔗 Learn more: https://bit.ly/4nNmOks

#Genomics #Genetics

8 high level positions at NIH posted including 6 institute director positions (NIMH, NIGMS, NICHD, NIDCR, NHGRI, NLM).

Only open for 2 weeks (applications due November 21).

Application materials include a) CV b) vision statement c) a photocopy of doctoral degree.

hr.nih.gov/careers/open...

Excited to be attending my first SITC Annual Meeting! On Friday, Brandon Fischer from @nebanovich.bsky.social will present a poster on some of our work on Chlorotoxin CAR T cells. Check it out! #SITC25

reminder that my (wonderful, diverse, interdisciplinary) department at the University of Oregon is seeking applications for an Associate/Full Professor of Data Science -- deadline 10/31 and only cover letter/CV needed to apply

academicjobsonline.org/ajo/jobs/30328

My science 💜 is full as I reflect on a great week at #ASHG25! 5 posters from the lab, symposium on #epilepsy 🧠 #genetics 🧬, catching up with so many friends and colleagues. Already excited for #ASHG26 in Montreal - see you there!

Thank you! I am so honored and had such a wonderful time at #ASHG. What an amazing and inspiring society!

#ashg25

Great presentations from the lab this week at #ashg25.

#ashg25

Bulk of the lab are presenting posters today!

I'm recruiting a postdoc for my group (based in beautiful Eugene, OR). Please get in touch if you're interested, esp if you'd like to chat at #ASHG25!

After a short *3 hour* flight delay excited to be in the air on the way to Boston for #ASHG25. Looking forward to sharing the lab's work.

Great new work from the Barthel lab!

Happy to share that this work together with @opentargets.org is now out at Nature Communications.

Excited for a major milestone in our efforts to map enhancers and interpret variants in the human genome:

The E2G Portal! e2g.stanford.edu

This collates our predictions of enhancer-gene regulatory interactions across >1,600 cell types and tissues.

Uses cases 👇

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Interesting @nebanovich.bsky.social @florisbarthel.bsky.social glad we just installed an @elembio.bsky.social Aviti24 @tgenresearch.bsky.social. @aphillippy.bsky.social is this with standard cloudbreak chemistry or the high accuracy ultraQ chemistry

"We’re currently at about 54% of last year’s total [of funded R01s]...Another way to look at this is that we’re missing 1,809 new R01s."

Leopard-EM: An extensible 2DTM package to accelerate in situ structural biology The ability to generate high-resolution views of cells with cryogenic electron microscopy (cryo-EM) can reveal the molecular mechanisms of biological processes in their native cellular context. The re...

First pre-print from the Lucas Lab led by Matthew Giammar and @joshdcryoem.bsky.social online today! We develop a new, extensible Python implementation of 2DTM and apply it to build pixel size optimization, constrained search and characterize molecular motions in situ www.biorxiv.org/content/10.1...

Our paper identifying evidence of off-target probe binding in the 10x Genomics Xenium Breast Gene Panel is now available as a reviewed preprint at #eLife

elifesciences.org/reviewed-pre...

We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇

Congrats @smacklab.bsky.social

Gotcha. I just did the math for NIGMS, and they're still short ~200 R01 equivalents compared to last year, with only 7 MYF'd. MYF funding for other mechs could contribute to fewer grants, but it still doesn't seem like the math works out. Maybe more will show up Reporter to reduce the shortfall.

🚨 New @10xgenomics.bsky.social eBook out now!

Hear from Dr @saskiafreytag.bsky.social, @wehi-research.bsky.social on how spatial biology is helping identify therapeutic cancer targets.

Plus, insights from other leading researchers worldwide.

📖 Download here: pages.10xgenomics.com/web-2025-08-...

Congrats Roshni!

Congrats Maria! So well deserved.

Jeremy, really appreciate all your analysis. I'd also sent this question as a message but it may have dumped into your requests. For non competitive renewals, what happens if we don't get a NOA before the end of the FY? I have a few awards like this that I'm getting nervous about.

#candidATE

So proud of @saahimall.bsky.social for crushing her comps today. She's a force in the lab and seeing her present her plan for the next few years was awesome.

#nocrumbs

Postdoctoral Fellow, Hattie Chung Lab (Yale School of Medicine) Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

Our lab at Yale @yalemedicine.bsky.social seeks #postdocs with in vivo expertise to pioneer research at the intersection of tissue remodeling & aging. Work with us to uncover immunological & vascular drivers of ovarian aging, applying single-cell, spatial omics, and ML! jobrxiv.org/job/yale-uni...

Just to give the TL;DR on this one:

*The* main purpose of the EO is to move funding priorities and decisions away from experts and career professionals over to political appointees. With the ultimate power held by Vought / OMB.