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James Boocock

@theboocock.bsky.social

Postdoctoral scholar at UCLA working on yeast genetics and genomics research.

120 Followers  |  299 Following  |  7 Posts  |  Joined: 10.09.2023  |  1.8777

Latest posts by theboocock.bsky.social on Bluesky

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Zara Weinberg passed away earlier this week. She joined my lab earlier this year when her postdoc lab formally closed.
She was a brilliant scientist, supportive mentor, dear friend, avid music fan, rabid believer in public transit, open science champion, and above all just an amazing human.

31.10.2025 13:17 β€” πŸ‘ 357    πŸ” 77    πŸ’¬ 36    πŸ“Œ 17

Incredible. We should be investing MORE in science, not less.

28.07.2025 02:12 β€” πŸ‘ 712    πŸ” 149    πŸ’¬ 12    πŸ“Œ 4
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#TheLastOfUs: A fungus that actually infects the human brain 🧠

A recent #G3journal paper from @hitenmadhani.bsky.social and team presents a valuable auxin-inducible genetic toolkit for conditional mutation in the fungal pathogen Cryptococcus neoformans, which can cause meningitis: buff.ly/rIkC09R

05.06.2025 18:03 β€” πŸ‘ 5    πŸ” 3    πŸ’¬ 1    πŸ“Œ 1

When should adaptation arise from a polygenic response versus few large effect changes? https://www.biorxiv.org/content/10.1101/2025.05.15.654234v1

17.05.2025 20:32 β€” πŸ‘ 46    πŸ” 25    πŸ’¬ 0    πŸ“Œ 1
Illustration featuring green/orange dots and dashes, with the heading:  "Ideas and Speculation. A new article section for your next publication".

Illustration featuring green/orange dots and dashes, with the heading: "Ideas and Speculation. A new article section for your next publication".

Our authors can freely speculate the meaning and implications of their data in our new section:

πŸ’‘ Ideas and Speculation πŸ’‘
buff.ly/0I8lpwz

11.05.2025 10:01 β€” πŸ‘ 17    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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Scientists fear Trump administration cuts to NIH could impact the health of Americans for generations Former National Institutes of Health Director Dr. Francis Collins, who abruptly left his NIH research lab in February, fears aggressive downsizing could impact Americans' health.

Here is a link to 60 Minutes NIH segment...

www.cbsnews.com/news/scienti...

28.04.2025 01:09 β€” πŸ‘ 341    πŸ” 151    πŸ’¬ 13    πŸ“Œ 4
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Psychedelic control of neuroimmune interactions governing fear - Nature Inflammatory monocytes in the brain meninges promote stress-induced fear behaviour, and the pathways involved can be modulated using psychedelic compounds.

Psychedelics reduce fear by targeting immune cells that modulate brain cells

This Nature paper uses a combination of genomic & behavioural screens to show that astrocytes in the amygdala limit stress-induced fear behaviour through epidermal growth factor receptor
πŸ§ͺ
www.nature.com/articles/s41...

27.04.2025 05:45 β€” πŸ‘ 51    πŸ” 9    πŸ’¬ 3    πŸ“Œ 1
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Trump administration reverses abrupt terminations of foreign students’ US visa registrations DOJ announced the reversal in federal court after weeks of intense scrutiny by courts and dozens of restraining orders issued by judges.

Good.

But stay wary

www.politico.com/news/2025/04...

25.04.2025 17:26 β€” πŸ‘ 43    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
Protesters marching north with diverse signs demanding due process

Protesters marching north with diverse signs demanding due process

Protesters marching east in 42nd st, Chrysler Building in the background

Protesters marching east in 42nd st, Chrysler Building in the background

Happy to join a few thousand friends in midtown today.

Free Mahmoud
Free Rumeysa
Free Kilmar and everyone at Cecot
Due process
No kings

19.04.2025 17:56 β€” πŸ‘ 22    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
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A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin Skribbe etΒ al. comprehensively mapped transcription factor interaction networks in S.Β pombe through proteomics and chromatin profiling. Their study offers invaluable resources, including an endogenously tagged transcription factor strain library and the TFexplorer web tool, which enables user-friendly exploration of the interactions revealed.

A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin

04.04.2025 11:33 β€” πŸ‘ 13    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
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A New Type of Antifungal

Antifungal drug discovery gets an interesting and unexpected shot of good news:

20.03.2025 21:19 β€” πŸ‘ 63    πŸ” 7    πŸ’¬ 3    πŸ“Œ 2
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Enhancing Yeast Transformation: Achieving up to a Tenfold Increase Through a Single Adjustment in the Lithium Acetate–Polyethylene Glycol Method In red are the proposed improvements to the classical yeast transformation protocol.

A slight modification to the standard yeast lithium acetate transformation protocol increases transformation efficiency substantially.

Basically, 2 fold increase if you resuspend in 2M sorbitol after heat shock, and an additive increase with some sorbitol during heat shock.

16.03.2025 13:46 β€” πŸ‘ 29    πŸ” 12    πŸ’¬ 3    πŸ“Œ 1
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Scoop: FDA vaccine meeting abruptly canceled. Meeting was to determine 2025-2026 influenza vaccine composition. Hi everyone,

I believe we have breaking news in Inside Medicine.

I spoke to a member of the FDA vaccine committee who confirmed that the meeting to decide the 2025-2026 flu shot composition was abruptly canceled today.

My on-the-record Q&A with the FDA advisor:
insidemedicine.substack.com/p/scoop-fda-...

26.02.2025 23:15 β€” πŸ‘ 637    πŸ” 323    πŸ’¬ 62    πŸ“Œ 73
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NIH is again throttling research funding in defiance of a federal court order A freeze on "new and continuation awards" will "remain in place" pending DEI review, states a new internal memo.

Despite court order, NIH grants remain frozen. Newly awarded grants, grants with fundable scores, & funds for a new budget cycle of a current project are all *FROZEN*πŸ₯Ά and not being released. US research is being choked to death & is on life support right now www.motherjones.com/politics/202...

26.02.2025 12:04 β€” πŸ‘ 3869    πŸ” 1580    πŸ’¬ 175    πŸ“Œ 83
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Roche's SBX sequencing by expansion - preprint out!
www.biorxiv.org/content/10.1...

24.02.2025 23:00 β€” πŸ‘ 81    πŸ” 44    πŸ’¬ 3    πŸ“Œ 1

Good lord

21.02.2025 22:58 β€” πŸ‘ 105    πŸ” 44    πŸ’¬ 4    πŸ“Œ 1
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Revealed: NIH research grants still frozen despite lawsuits challenging Trump order The Trump administration is exploiting a loophole to keep a funding freeze in place, leaving researchers in limbo.

Almost all grant-review meetings still suspended at the NIH -- the Trump administration is exploiting a loophole to keep a funding freeze in place, leaving researchers in limbo.

@maxkozlov.bsky.social reports for @nature.com
www.nature.com/articles/d41...

20.02.2025 20:30 β€” πŸ‘ 14    πŸ” 11    πŸ’¬ 0    πŸ“Œ 1
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Graduate student admissions paused and cut back as universities react to Trump orders on research β€” STAT Acceptances for biomedical graduate students and postdoctoral scholars are being cut back at some universities and medical centers across the country as many grapple with the potential impact of the T...

Biomedical graduate admissions paused or cut back as some universities respond to Trump orders on research - STAT

apple.news/APlQhGHRrSfy...

20.02.2025 02:04 β€” πŸ‘ 40    πŸ” 21    πŸ’¬ 0    πŸ“Œ 4

a grim but essential read, if you care about American science

the system was already under stress from underfunding over many years (nominal increases were sub-inflationary)

but this is a sudden and severe shock to the system

19.02.2025 20:35 β€” πŸ‘ 30    πŸ” 15    πŸ’¬ 0    πŸ“Œ 0
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Distinct explanations underlie gene-environment interactions in the UK Biobank The role of gene-environment (GxE) interaction in disease and complex trait architectures is widely hypothesized but currently unknown. Here, we apply three statistical approaches to quantify and dist...

Distinct explanations underlie gene-environment interactions in the UK Biobank.
www.cell.com/ajhg/abstrac...

17.02.2025 16:56 β€” πŸ‘ 5    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
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Insufficient evidence for a severe bottleneck in humans during the Early to Middle Pleistocene transition Abstract. A recently proposed model suggests a severe bottleneck in the panmictic ancestral population of modern humans during the Early to Middle Pleistoc

Insufficient evidence for a severe bottleneck in humans during the Early to Middle Pleistocene transition
academic.oup.com/mbe/advance-...

17.02.2025 16:56 β€” πŸ‘ 8    πŸ” 5    πŸ’¬ 1    πŸ“Œ 0

A big loss and very bad sign for NIH, folks

12.02.2025 16:40 β€” πŸ‘ 496    πŸ” 144    πŸ’¬ 15    πŸ“Œ 4

I would expect to see this at every research institute until there's clarity on funding and budgets.

14.02.2025 20:40 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0

NEW: approximately 330 National Cancer Institute probationary employees will be fired this afternoon. That’s a bit less than 10% of its entire staff.

14.02.2025 18:09 β€” πŸ‘ 372    πŸ” 215    πŸ’¬ 15    πŸ“Œ 39

Tragic.

14.02.2025 18:12 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Is it only probationary employees? If so, they’ll have less job security in the contracts. I assume they’ll keep coming for the rest of the federal workers as best they can.

14.02.2025 18:05 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Anyone Can Push Updates to the DOGE.gov Website "THESE 'EXPERTS' LEFT THEIR DATABASE OPEN."

Scoop: The databases powering DOGE.gov are insecure, and people outside the government have already pushed their own updates to the site to prove it:

www.404media.co/anyone-can-p...

14.02.2025 06:44 β€” πŸ‘ 14519    πŸ” 5959    πŸ’¬ 409    πŸ“Œ 1137
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Stand Up And Be Counted

Biopharma companies and CEOs are keeping their heads down at their own peril. They should speak up about what’s happening to the NIH and other science agencies before it’s too late.

Silence gives consent. And no one should consent to this.

12.02.2025 16:45 β€” πŸ‘ 386    πŸ” 159    πŸ’¬ 17    πŸ“Œ 19

Trump & Musk are making massive cuts to the National Institutes of Health.

I know there is a lot going on right now, but this is one of worst things they have done so far, will affect cancer research and trials, the search for cures, innovation and competitiveness, our universities. Your lives.

08.02.2025 23:16 β€” πŸ‘ 4796    πŸ” 1218    πŸ’¬ 478    πŸ“Œ 81
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Archibald: NIH cuts threaten UAB, Birmingham and beyond NIH grants in Alabama in 2023 supported 4,769 jobs for an economic impact of $909 million and went to institutions from Mobile to Huntsville.

If these NIH cuts stick -- and who knows in this environment -- my whole metro will to be screwed. Not to mention the actual lives affected.
Talk about cutting off your nose for spite.

www.al.com/news/2025/02...

08.02.2025 19:25 β€” πŸ‘ 107    πŸ” 57    πŸ’¬ 6    πŸ“Œ 10

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