Yanying Yu

Global burden of lower respiratory infections and aetiologies, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023 This comprehensive analysis underscores both the gains achieved through vaccination and the challenges that remain in controlling the LRI burden globally. Furthermore, it demonstrates persistent dispa...

New Research

Global burden of lower respiratory infections and aetiologies, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023

www.thelancet.com/journals/lan...

16.12.2025 09:10 — 👍 10    🔁 6    💬 0    📌 1

Pneumococcal S protein coordinates cell wall modification and repair to resist host antimicrobials - Nature Microbiology Streptococcal S protein activates a peptidoglycan cell wall repair and modification complex to promote resistance of Streptococcus pneumoniae to lysozyme and LL-37, and increase virulence during infec...

#NewResearch

S protein from Streptococcus pneumoniae activates cell wall repair and modification to promote virulence against in vivo antimicrobial pressures including lysozyme and LL-37 @veeninglab.com

#MicroSky 🦠

www.nature.com/articles/s41...

19.12.2025 14:05 — 👍 4    🔁 2    💬 0    📌 1

Biased sampling driven by bacterial population structure confounds machine learning prediction of antimicrobial resistance Machine learning methods have emerged as promising tools to predict antimicrobial resistance (AMR) and uncover resistance determinants from genomic data. This study shows that sampling biases driven b...

Our new paper from my PhD work is online. It shows how bacterial population structure can trick machine learning—sampling matters! Many thanks to @lbarquist.bsky.social for the support and guidance! dx.plos.org/10.1371/jour...

16.12.2025 20:49 — 👍 16    🔁 9    💬 0    📌 1

course schedule as a table. Available at the link in the post.

I'm teaching Statistical Rethinking again starting Jan 2026. This time with live lectures, divided into Beginner and Experienced sections. Will be a lot more work for me, but I hope much better for students.

I will record lectures & all will be found at this link: github.com/rmcelreath/s...

09.12.2025 13:58 — 👍 658    🔁 236    💬 12    📌 20

eggNOG v7: phylogeny-based orthology predictions and functional annotations academic.oup.com/nar/advance-...

11.12.2025 17:03 — 👍 7    🔁 3    💬 0    📌 0