Mikaela Koutrouli

🤖🧬 New biomedical MCP server added to the registry:
anndata-mcp
Check it out at https://biocontext.ai/registry/biocontext-ai/anndata-mcp

We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST!

Eric Armingol will be presenting on scCellFie!

More information and Zoom registration link in 🧵

You asked, we delivered!

Online participation is now live.

We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST!

Eric Armingol will be presenting on scCellFie!

More information and Zoom registration link in 🧵

We will have our next community meeting on Tuesday, 2025-10-28 at 18:00 CEST! @kexinhuang.bsky.social will be presenting on Biomni: Building a Virtual Biomedical Scientist.

(Zoom registration link and more information in thread!)
🧵

How amazing that Genentech supports us and will have such a strong representation at the @scverse.bsky.social conference! 🙏

How amazing that Genentech supports us and will have such a strong representation at the @scverse.bsky.social conference! 🙏

🌟 Thank You to Our Silver Sponsor: Proteintech! 🌟

We're excited to recognize Proteintech as a Silver Sponsor of scverse conference 2025! 🥈

@proteintech.bsky.social
#scverse2025 #Proteintech #ComputationalBiology #SingleCell #Antibodies #ProteomicsTools #SpatialOmics #Bioinformatics

👉 and make sure not to miss the one-and-only Romain Lopez's talk about PhenoBridge, our joint work on ML approaches to integrate perturb-seq and genetic association data (Wed 10.45am)

Come find me or just reach out if you'd like to chat! [2/2]

En route to Boston for #ASHG25 #ASHG2025!
👉 I'll be presenting a poster on our new work on genome-wide perturb-seq screens in primary human T cells (5049W, Wed 2.30pm)
👉 you can hear me talk about it at the Industry Education session presented by Ultima Genomics (Thu 3pm) [1/2]

While the conference is underway, business as usual! 💪

Last chance for the early-bird 🐣 Join us!

🌟 Thank You to Our Gold Sponsor: Stellaromics! 🌟

We're proud to recognize Stellaromics as a Gold Sponsor of scverse conference 2025! 🥇

@stellaromics.bsky.social
#scverse2025 #SpatialBiology #3DSpatial #ComputationalBiology #SingleCell #Stellaromics #SpatialOmics #Bioinformatics

We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST!
Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis.
(Zoom registration link and more information in thread!)
🧵

ICYMI!
🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀
We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025!

More information in 🧵

#scverse2025 #Bioinformatics #AgenticAI #Conference

🤖🧬 New biomedical MCP server added to the registry:
OMOP MCP Server
Check it out at https://biocontext.ai/registry/OHNLP/omop_mcp

Fantastic lineup of panelists to discuss everything agentic coding in bioinformatics, still time to register here:
www.eventbrite.com/e/scverse-co...

Can’t wait 😱

🌟 Thank You to Our Diamond Sponsor: Tahoe Therapeutics! 🌟

We're thrilled to announce that Tahoe Therapeutics is supporting scverse conference 2025 as a Diamond Sponsor! 💎

Details in thread!
🧵

@tahoetherapeutics.bsky.social

#ComputationalBiology #SingleCell #DrugDiscovery #TahoeTherapeutics

🚀 Excited to share scPortrait! Led by Sophia Mädler & Niklas Schmacke w/ the Mann lab — a new @scverse tool for standardized single-cell image data. Enables ML-ready extraction, >1B cell processing, cross-omics, & cancer macrophage insights.
🔗 www.biorxiv.org/content/10.1...

🔬 CZI Workshop at scverse 2025 🔬

Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery
🧵

@chanzuckerberg.bsky.social
#scverse2025 #SingleCell #SpatialOmics #CELLxGENE #VirtualCells #AIBiology

🧬 Tahoe Workshop at scverse conference 2025 🧬

Disease Biology and Therapeutics in the Age of Frontier Datasets
🧵

@tahoetherapeutics.bsky.social

#scverse2025 #ComputationalBiology #DrugDiscovery #TahoeTherapeutics #SingleCell #PerturbationBiology

🎉scverse conference 2025 Call for Abstracts DEADLINE EXTENDED! 🎉

We're excited to announce that the deadline to submit abstracts for the scverse Conference 2025 has been extended to September 15, 2025!
🧵

#scverse #scverse2025 #SingleCell #Conference

YouTube video by Lars Juhl Jensen Choosing research projects: the risk–reward–work triangle

Simple advice on choosing research projects
This video has been a long time coming. It reflects my thoughts on how to wisely choose which projects to work on, balancing the risk, reward, and work required.
youtu.be/D5FBB7OPrLw

Meet the keynote speakers for the 2025 scverse conference!

Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University
🧵

@elhamazizi.bsky.social
@columbiauniversity.bsky.social

#scverse #scverse2025 #machinelearning #genomics #cancerimmunology

We will have our next community meeting on Tuesday, 2025-09-02 at 18:00 CEST! Emma Dann will be presenting on "Mapping genetic effects on complex traits with single-cell perturbation data".
🧵

🧫 Meet the keynote speakers for the 2025 scverse conference!
Erika Alden DeBenedictis, Co-founder of The Align Foundation & CEO of Pioneer Labs

@erika-alden.bsky.social ‪
@alignbio.bsky.social
@pioneerlabs.bsky.social

#scverse #scverse2025 #StructuralBiology #Biotech #Stanford

scVerse conference is at Stanford this year! Encourage folks (especially Bay Area/West coast folks) to sign up and attend. Cool workshops/talks and other events + great community of developers for one of the most widely used open source software for single cell data analysis!

My supervisor, John Marioni, will be giving a keynote at the scverse conference. His contributions to single-cell and spatial transcriptomics have shaped much of the field, and I’m looking forward to hearing his perspective on where computational biology is headed.

@panosroussos.bsky.social will be one of the keynote speakers at the @scverse.bsky.social conference. Looking forward to his talk and the rare chance to have him on the West Coast.