Yupaporn Phannarangsee 🐈🐈‍⬛😻

Unveiling hidden variables in stressed bacteria

@cp-cellreports.bsky.social Review by @divyach.bsky.social and @maxencevincent.bsky.social

www.cell.com/cell-reports...

Yongfeng Zhou (Agricultural Genomes Institute at Shenzhen, China)

Yongfeng Zhou, Professor at the Agricultural Genomes Institute at Shenzhen, China, is one of the new members of MBE's editorial board. He brings in his experience on plant domestication, structural variation, climate adaptation, and transposable elements.

#societyjournal

A Cave That Refuses to Be Silent Deep beneath Sulawesi, a single site preserves nearly the entire human story of an island, and hints that different kinds of humans may once have shared the same ground.

A cave in Sulawesi preserves over 200,000 years of human history. Deep layers hint that Homo sapiens may have overlapped with an earlier human species. Who shared the island, and when? #Archaeology #HumanEvolution #Pleistocene #Wallacea www.anthropology.net/p/a-cave-tha...

Female researchers: interested in a postdoc at @univienna in #sedaDNA, #metagenomics or #ancientDNA? Apply via the E-STEEM fellowship through my group. Projects are flexible and can be shaped together!
careers.univie.ac.at/en/postdoc/e...

Interesting model-driven paper out of @jordonhemingway.bsky.social's group on the relative rates of pyrite burial and oxidation and how both relate to what's going on with organic carbon. 🧪⚒️

I am very excited to present this work to the (sed)aDNA community - and I am looking forward to some cool applications!

If you want to use quicksand, I recommend following supplementary section 8, which demonstrates several use-cases :)

see github.com/mpieva/quicksand for more details

Paleogenomics Reveals a Loss of Bovine Lineages in Mid-latitude Asia Over the Last 200,000 Years Abstract. Bovines have a complex yet poorly understood evolutionary history that is characterized by admixture and diversity loss during the Late Pleistoce

@alexgilardet.bsky.social et al. recovered ancient DNA from bovine bones in the Denisova cave to characterize Pleistocene bovine diversity, identifying the Altai Mountains as a hotspot for bovine diversity.

🔗 doi.org/10.1093/gbe/evaf206

#genome #evolution #aDNA #denisova

quick analysis of sedimentary ancient DNA using quicksand Abstract. Ancient DNA extracted from the sediments of archaeological sites (sedaDNA) can provide fine-grained information about the composition of past eco

Cool work from my colleagues @mpi-eva-leipzig.bsky.social just dropped! Merlin Szymanski, @janetk.bsky.social et al. developed quicksand, a fast, accurate and beautifully designed Nextflow pipeline for taxonomic classification of mammalian mtDNA from ancient sediment DNA. doi.org/10.1093/molb...

Hydrogenotrophic methanogens overwrite isotope signals of subsurface methane Methane, a greenhouse gas and energy source, is commonly studied using stable isotope signals as proxies for its formation processes. In subsurface environments, methane often exhibits equilibrium iso...

Bad news for people using C isotopes to differentiate between methane of biotic or abiotic origins:

www.science.org/doi/10.1126/...

This is a followup to this paper by the same team I opsted a few days ago, same disclamer.

What We Talk About When We Talk About Microbial Species Genome annotation, alignment and phylogenetics are at the centre of most studies in evolutionary genomics. These techniques function best when rooted in prior work. Genes are mined from new genomes u....

💡A recent publication delves into the evolving concepts within microbial ecology.
Instead of focusing on new findings, the authors engage in a thoughtful discussion about the interplay between molecular tools and ecological theory in understanding the relationship between hosts and their microbes.🦠

Postdoc (m/f/d) in Endosymbiosis Research

📢Postdoc position available!🧪🧫🧬
Our group is seeking a motivated researcher to investigate the molecular mechanisms driving host–endosymbiont interactions.
Full details & application: karriere.hhu.de//index.php?a....
Please help us get the word out!

Competition between Pseudomonas species constrains ecological diversification in polymicrobial biofilms

NPJ Biofilms and Microbiomes from Henriette Lyng Røder and @vscooper.micropopbio.org

www.nature.com/articles/s41...

Competitive fitness of Staphylococcus aureus against nasal commensals depends on biotin biosynthesis and acquisition Abstract. The human nasal microbiome can serve as a reservoir for pathogens. In particular, the opportunistic pathogen Staphylococcus aureus can be a membe

Really happy to see the final version of this published in @isme-microbes.bsky.social. We show that production of and competition for biotin shapes S. aureus fitness in the context of nasal commensals doi.org/10.1093/isme...
Work lead by the amazing Kevser Bilici!

FEBS Press The urgent need for sustainable agriculture places biological nitrogen fixation at the forefront of current biotechnological research. Plant growth-promoting rhizobacteria play crucial roles in agric...

A small contribution from us & Edi Gerhardt @febsj.bsky.social

Highlighting the recent findings: Structure of the NifL-NifA complex controlling nitrogen fixation gene expression in Azotobacter

febs.onlinelibrary.wiley.com/doi/10.1111/...
@sfb1381.bsky.social @hhu.de @mibinet.bsky.social

Prof.Michal Krobicki with “ What kind of Lithiotis-type bivalves-bearing buildups can we predict on Timor Island as their palaeobiogeographically easternmost location along the southern margin of the Tethys?

We are recruiting!

If you like evolutionary biology, microbial genomics, and host-pathogen interactions we have a PhD opening at @ugiatucl.bsky.social using population-scale metagenomics to map global phage diversity and uncover evolutionary signatures that could point to new antimicrobials.

Prof. Lionel Cavin with ”When a single bone breaks a biogeographical scenario: Thailand’s first coelacanth”

THE 4TH INTERNATIONAL CONFERENCE ON PALAEONTOLOGY OF SE ASIA (ICPSEA2025)
Mahasarakham University, NE Thailand, and Satun UNESCO Global Geopark, Southern Thailand
From 22nd to 29th November, 2025

Shabu say: what are you doing mom!

Morning bloom

FSP1-mediated lipid droplet quality control prevents neutral lipid peroxidation and ferroptosis - Nature Cell Biology Lange et al. identify a lipid droplet quality control pathway in which FSP1 safeguards stored neutral lipids from lipid peroxidation, thereby preventing the induction of ferroptosis.

☕ @mikelangelipid.bsky.social @olzmannlab.bsky.social & co identify a #LipidDroplet quality control pathway in which FSP1 safeguards stored neutral lipids from lipid peroxidation, thereby preventing the induction of #ferroptosis.
@berkeleymcb.bsky.social
bit.ly/49mTeyF

Epigenetic landscape underlying plant-microbiome chemical communication Abstract. Chemical communication, a universal mode among the interactive members within dynamic plant-microbiome systems, fundamentally drives coevolutiona

Epigenetic landscape underlying plant-microbiome chemical communication

-in #ISMEJournal

academic.oup.com/ismej/advanc...

Scientists find hidden antibiotic 100x stronger against deadly superbugs A team of scientists discovered a hidden antibiotic 100 times stronger than existing drugs against deadly superbugs like MRSA. The molecule had been overlooked for decades in a familiar bacterium. It ...

"Chemists from the University of Warwick and Monash University have identified a promising new #antibiotic that can combat drug-resistant bacterial infections, including MRSA and VRE."

www.sciencedaily.com/releases/202...

Alkaline pH‐Driven Metabolic Plasticity of Lactococcus lactis FM03 Alkaline pH induces a metabolic shift in Lactococcus lactis FM03 from mixed-acid to homolactic fermentation, driven by proteome-level constraints in the mixed-acid branch. This shift reduces biomass ....

Alkaline pH-Driven Metabolic Plasticity of Lactococcus lactis FM03

#EnvironMicrobiol

enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...

Effects of sporulation times in liquid or on plates on Bacillus subtilis spore resistance, germination, inner membrane fluidity and permeability, and core contents | Journal of Bacteriology Cells of some Bacillota cause food spoilage and human diseases. These organisms’ ability to do this is exacerbated by forming hard-to-kill dormant spores because of their resistance and ability to com...

Effects of sporulation times in liquid or on plates on Bacillus subtilis spore resistance, germination, inner membrane fluidity and permeability, and core contents

-in @JBacteriol

journals.asm.org/doi/10.1128/...

Direct SpoIIQ-SpoIIIAH interaction is dispensable for sporulation in Bacillus subtilis Bacillus subtilis sporulation involves a fascinating phagocytic process in which the mother cell engulfs the forespore, internalizing the latter as a cell-within-a-cell. Peptidoglycan remodelling mach...

Direct SpoIIQ-SpoIIIAH interaction is dispensable for sporulation in Bacillus subtilis

-in J Biol Chem from Imrich Barák

www.jbc.org/article/S002...

Bacillus subtilis as cell factory for enhanced production of the biopolymer precursor pyridine-2,6-dicarboxylic acid - Microbial Cell Factories Background Pyridine-2,6-dicarboxylic acid (DPA) is a valuable dicarboxylic acid that has the potential to serve as a precursor for bio-sustainable and bio-degradable materials and self-healing polymer...

Bacillus subtilis as cell factory for enhanced production of the biopolymer precursor pyridine-2,6-dicarboxylic acid

-in Microbial Cell Factories from Jeroen Hugenholtz

microbialcellfactories.biomedcentral.com/articles/10....

Natural hydrogen, which forms naturally in the Earth's crust, could be a low-carbon energy resource but scientific rigor is needed is needed to balance any hype, according to our recent report. Read more: #ClimateChange #COP30 https://bit.ly/4ri01jV

#funfood