Congratulations @alicegros.bsky.social @jules-vanaret.bsky.social & @dunsingvalentin.bsky.social for this huge team effort! Gastruloids morphogenesis is so fascinating and now we can explore and travel through them in 3D & at cell resolution day and night 🤩
16.07.2025 07:21 — 👍 14 🔁 5 💬 0 📌 1
Feat. @guignardlab.bsky.social @pflenne.bsky.social @shamtlili.bsky.social @philipperoudot.bsky.social
The Tapenade pipeline is fully open-source with user-friendly notebooks and Napari plugins: github.com/GuignardLab/... 🫒
15.07.2025 11:48 — 👍 6 🔁 2 💬 1 📌 0
A quantitative pipeline for whole-mount deep imaging and analysis of multi-layered organoids across scales
So excited to share my 1st paper !!🌞
Co-authored with @jules-vanaret.bsky.social @dunsingvalentin.bsky.social, we developped an integrated pipeline for imaging, segmenting and analysing cell-scale patterns in gene expression + tissue properties in complex 3D tissues
elifesciences.org/reviewed-pre...
15.07.2025 11:41 — 👍 17 🔁 7 💬 1 📌 3
Organoid dancing.
It is written
"It takes n>1 to tango"
🎶 🪩 🪩 End of the week #segmented #organoids dancing 🪩 🪩 🎵! By @alicegros.bsky.social 🤗.
I really like them!
13.12.2024 17:25 — 👍 14 🔁 2 💬 0 📌 0
Research engineer and core facility manager at the Institut Pasteur
https://research.pasteur.fr/en/team/image-analysis-hub/
Everything #TrackMate #Mastodon-sc (the tool to track lineages in microscopy videos, not the social networks etc).
Views are my own
I sail the vast sea of gastruloids, guided by the flow of embryonic tissue development — just beyond gastrulation!
Home port: IBDM, Marseille
PhD student in stem cell and developmental biology
David lab, Nantes, France
Penn MD/PhD student.
Runner when bones work
PI @ibps.bsky.social. Mechanics of neuronal development - Olfactory placode morphogenesis - Cell movements - Axon growth - ECM - Zebrafish
https://www.ibps.sorbonne-universite.fr/en/research/development-adaptations-and-aging/mechanics-neuronal-development
Biologist fascinated by cells, molecules and the evolution of cellular processes.
Membrane traffic, cytoskeleton, microscopy, fungi, evolutionary cell biology.
https://www.unige.ch/sciences/biochimie/labs/marko-kaksonen/
Machine Learning for Microscopy | Prof @ TU Dresden | https://scholar.google.com/citations?user=ZltxyqoAAAAJ
Interdisciplinary research in Biophysics / Microscopy / Cell biology / Bioinformatics - lecturer in Biostatistics
IBDM - Aix-Marseille University
PhD student at IBDM and DyNaMO, Marseille
Postdoc at Dey|Dudin|Schwab Groups, EMBL
Mitosis and MTOCs in Ichthyosporea, fungi and more
Postdoc @Dudin lab, UNIGE
Previously EMBL HD
Lots of microscopy of all different things. If it’s not big enough, make it bigger #UExM
Views my own
🔬 Animating the french community of #scientists and companies involved in #microscopy and #imaging for #biology
👉 http://imabio-cnrs.fr
#nanoscopy #cell_dynamics #biosensors #superresolution #confocal #fluorescence #endoscopy #photoacoustics
Professor of Biophysics -
@ISTAustria Using physics to understand biological questions, such as how embryos grow!
Evolutionary cell biology @EMBL
evonuclab.org
A mix of physics and biology, understanding shapes in biology, from molecules to tissues.
http://www.orelrouxlab.org
Mechanobiology / Multi-cellular assemblies
Our interdisciplinary, international team of scientists at EMBL Barcelona provides state-of-the-art imaging facilities to scientists worldwide
https://www.embl.org/groups/mesoscopic-imaging-facility/
Evolutionary cell biology / evolution of morphogenesis / animal origins / choanoflagellates @institutpasteur.bsky.social
https://research.pasteur.fr/en/team/evolutionary-cell-biology-and-evolution-of-morphogenesis/
He/Him. Evolution and Bioinformatics. Posts mine alone, in English (mostly) & French. Head of @dee-unil.bsky.social, group leader at @SIB.mstdn.science.ap.brid.gy. PI of @bgee.org
🦣 Main account: https://ecoevo.social/@marcrr
