We released our preprint on the CREsted package. CREsted allows for complete modeling of cell type-specific enhancer codes from scATAC-seq data. We demonstrate CREstedβs robust functionality in various species and tissues, and in vivo validate our findings: www.biorxiv.org/content/10.1...
03.04.2025 14:30 β π 75 π 38 π¬ 1 π 5
Thrilled to see the new version of our work out! A fantastic collaboration with @frankschnorrer.bsky.social @steinaerts.bsky.social @pierremangeol.bsky.social, Nikolai and Gabriele to do spatial transcriptomics in the adult fly -- huge thanks to everyone for bringing this to the finish line! ππͺ°
06.03.2025 10:34 β π 8 π 2 π¬ 0 π 0
Just very happy to have our paper out today! A big thanks to all our co-authors, and to Nikolai and @steinaerts.bsky.social for the teamwork over the past years. If you are interested in using our models for cross-species enhancer studies, check out crested.readthedocs.io/en/stable/mo... π
14.02.2025 10:07 β π 53 π 25 π¬ 3 π 3
Epigenetic Inheritance, Neuroscience & anything biology-related
https://www.odedrechavilab.com/
https://www.qedscience.com
Organizer of βThe Woodstock of Biologyβ
TED: https://shorturl.at/myFTY
Huberman Lab Podcast: https://youtu.be/CDUetQMKM6g
Postdoc @UZH. Interested in Genome stability, Cellular heterogeneity & Imaging.
Postdoc @ethz.ch Barbara Treutlein Lab | PhD βͺ@Lund university Malin Parmar Lab | Human brain development, single cell sequencing, cell replacement therapy π§ π§«π§¬
Schapiro lab at Heidelberg University and Heidelberg University Hospital. We work on #HighlyMultiplexedImaging and #SpatialOmics
Genomics initiative lead at @GoogleDeepMind.
Models from our team: Enformer, AlphaMissense, and AlphaGenome.
Genome, machine learning, and omics enthusiast
Genetics, bioinformatics, comp bio, statistics, data science, open source, open science!
Assistant Professor, UBC school of Biomedical Engineering. Trying to enable personalized medicine by solving gene regulatory code.
Principal AI scientist at Genentech. Previously NVIDIA, insitro, Stanford. AI + Genomics.
fly person, PhD student @ Stein Aerts Lab of Computational Biology, VIB.AI
We're using machine interfaces, human neurons and fruit flies to understand neurodegenerative disease at the VIB-KU Leuven Center for Brain & Disease Research π§
π» verstrekenlab.sites.vib.be
πͺ° 360.cbd.vib.be/labs/laboratory-of-neuronal-communication
Postdoc @ UU NL zombie ants | PhD @ VIB-CBD BE sleep & glia in flies
EMBO postdoc @teichlab @SCICambridge | Single-cell genomics and gene regulation | PhD in evodevo genomics @kaessmannlab @UniHeidelberg
shendure lab |. krishna.gs.washington.edu
Group leader @schapirolab.bsky.social at the Heidelberg University Hospital focusing on #HighlyMultiplexedImaging and #spatialomics #spatialbiology technologies and analysis. President of the European Society for Spatial Biology e.V. (ESSB)
