We released our preprint on the CREsted package. CREsted allows for complete modeling of cell type-specific enhancer codes from scATAC-seq data. We demonstrate CREsted’s robust functionality in various species and tissues, and in vivo validate our findings: www.biorxiv.org/content/10.1...
03.04.2025 14:30 — 👍 74 🔁 38 💬 1 📌 5
Thrilled to see the new version of our work out! A fantastic collaboration with @frankschnorrer.bsky.social @steinaerts.bsky.social @pierremangeol.bsky.social, Nikolai and Gabriele to do spatial transcriptomics in the adult fly -- huge thanks to everyone for bringing this to the finish line! 🙏🪰
06.03.2025 10:34 — 👍 8 🔁 2 💬 0 📌 0
Just very happy to have our paper out today! A big thanks to all our co-authors, and to Nikolai and @steinaerts.bsky.social for the teamwork over the past years. If you are interested in using our models for cross-species enhancer studies, check out crested.readthedocs.io/en/stable/mo... 🙂
14.02.2025 10:07 — 👍 53 🔁 25 💬 3 📌 3
Schapiro lab at Heidelberg University and Heidelberg University Hospital. We work on #HighlyMultiplexedImaging and #SpatialOmics
Research scientist at @GoogleDeepMind passionate about AI, genomics and biology.
Genome, machine learning, and omics enthusiast
Genetics, bioinformatics, comp bio, statistics, data science, open source, open science!
Assistant Professor, UBC school of Biomedical Engineering. Trying to enable personalized medicine by solving gene regulatory code.
Principal AI scientist at Genentech. Previously NVIDIA, insitro, Stanford. AI + Genomics.
PhD student at Stein Aerts Lab of Computational Biology
We're using machine interfaces, human neurons and fruit flies to understand neurodegenerative disease at the VIB-KU Leuven Center for Brain & Disease Research 🧠
💻 verstrekenlab.sites.vib.be
🪰 360.cbd.vib.be/labs/laboratory-of-neuronal-communication
Postdoc @ UU NL zombie ants | PhD @ VIB-CBD BE sleep & glia in flies
EMBO postdoc @teichlab @SCICambridge | Single-cell genomics and gene regulation | PhD in evodevo genomics @kaessmannlab @UniHeidelberg
shendure lab |. krishna.gs.washington.edu
Group leader @schapirolab.bsky.social at the Heidelberg University Hospital focusing on #HighlyMultiplexedImaging and #spatialomics #spatialbiology technologies and analysis. President of the European Society for Spatial Biology e.V. (ESSB)
PhD student @CBD KU Leuven
🐭🧠🔬
Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU)
Interdisciplinary research in Biophysics / Microscopy / Cell biology / Bioinformatics - lecturer in Biostatistics
IBDM - Aix-Marseille University
Developmental & cell biologist @IBDM and @Centuri in Marseille. Studying muscle making and maintenance in Drosophila and in culture.
Passionate cyclist.
VIB offers top-tier training and conference programs designed to inspire creativity, collaboration, and lifelong learning, enhancing research excellence and career development for scientists globally. Find out more: vibtrainingandconferences.be
