Malcolm White's Avatar

Malcolm White

@mfwhite2.bsky.social

Molecular microbiologist at the University of St Andrews, Scotland. My scientific interests include: CRISPR, antiviral defence, cyclic nucleotide signalling, archaea, nucleases.

1,106 Followers  |  197 Following  |  121 Posts  |  Joined: 23.10.2023  |  1.886

Latest posts by mfwhite2.bsky.social on Bluesky

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Scrapping REF should be ‘serious’ option, says Manchester VC - Research Professional News Duncan Ivison questions “usefulness” of “massive, bureaucratic” research assessment exercise

Wouldn't it be great if REF and ResearchFish disappeared off into the sunset together?
Scrapping REF should be ‘serious’ option, says Manchester VC www.researchprofessionalnews.com/rr-news-uk-u...

10.02.2026 11:37 — 👍 1    🔁 1    💬 0    📌 0

With these authors you know it’s a must-read

06.02.2026 19:08 — 👍 9    🔁 1    💬 0    📌 0
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Bacteriocin biophysics: From protein-protein interaction models to navigators of the bacterial cell envelope Bacteriocins are toxins deployed by bacteria to kill their competitors. Here, I reflect on my laboratory’s work on protein bacteriocins and their immunity proteins from Gram-negative bacteria. We unco...

A gift of an article from the inimitable Colin Kleanthous as he says a moving farewell to his laboratory. A brave, unrepentant and scientifically brilliant journey is described - please have a read, friends.

www.jbc.org/article/S002...

02.02.2026 12:39 — 👍 66    🔁 31    💬 2    📌 1
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Chemical inhibition of a bacterial immune system Bacteriophages are promising alternatives to antibiotics for treating bacterial infections. However, bacteria possess immune systems that neutralize bacteriophages. Zang et al. discover small molecule...

Chemical inhibition of a bacterial immune system

Small molecules inhibit type II Thoeris anti-phage systems from diverse bacteria. One compound, IP6C, improves phage-therapy against P. aeruginosa & is effective against Thoeris in polymicrobial communities
www.cell.com/cell-host-mi...

30.01.2026 17:20 — 👍 20    🔁 11    💬 0    📌 1

amen to that!

30.01.2026 14:35 — 👍 1    🔁 0    💬 1    📌 0

This is very bad news

30.01.2026 08:19 — 👍 2    🔁 3    💬 0    📌 0
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Multiple protein structure alignment at scale with FoldMason Protein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou...

FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social.
📄 www.science.org/doi/10.1126/...
🌐 search.foldseek.com/foldmason
💾 github.com/steineggerla...

30.01.2026 06:11 — 👍 297    🔁 147    💬 4    📌 3
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Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases Many bacterial defense systems restrict phage infection by breaking the molecule NAD+ to its constituents, adenosine diphosphate ribose (ADPR) and nicotinamide (Nam). To counter NAD+ depletion-mediated defense, phages evolved NAD+ reconstitution pathway 1 (NARP1), which uses ADPR and Nam to rebuild NAD+. Here we report a bacterial defense system called aRES, involving RES-domain proteins that degrade NAD+ into Nam and ADPR-1″-phosphate (ADPR-1P). This molecule cannot serve as a substrate for NARP1, so that NAD+ depletion by aRES defends against phages even if they encode NARP1. We further discover that some phages evolved an extended NARP1 pathway capable of overcoming aRES defense. In these phages, the NARP1 operon also includes a specialized phosphatase, which dephosphorylates ADPR-1P to form ADPR, a substrate from which NARP1 then reconstitutes NAD+. Other phages encode inhibitors that directly bind aRES proteins and physically block their active sites. Our study describes new layers in the NAD+-centric arms race between bacteria and phages and highlights the centrality of the NAD+ pool in cellular battles between viruses and their hosts. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, ERC-AdG GA 101018520 Israel Science Foundation, MAPATS grant 2720/22 Deutsche Forschungsgemeinschaft, SPP 2330, grant 464312965 Minerva Foundation with funding from the Federal German Ministry for Education and Research research grant from Magnus Konow in honor of his mother Olga Konow Rappaport Ministry of Aliyah and Immigrant Absorption, https://ror.org/05aycsg86 Clore Scholars Program

Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases | bioRxiv https://www.biorxiv.org/content/10.64898/2026.01.28.702374v1?rss=1

29.01.2026 04:39 — 👍 8    🔁 4    💬 0    📌 0
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A prophage-encoded abortive infection protein preserves host and prophage spread - Nature A Gifsy-1 prophage–encoded higher eukaryotes and prokaryotes nucleotide-binding protein, HepS, senses Siphoviridae infection, activates abortive defence by cleaving host transfer RNAs, blocks rival ph...

A prophage-encoded abortive infection protein preserves host and prophage spread www.nature.com/articles/s41...

28.01.2026 19:13 — 👍 42    🔁 20    💬 0    📌 2
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Jobs View the current job vacancies at the Microbiology Society.

We are looking for new editors for Microbiology, the flagship journal of @microbiologysociety.org

Deadline for applications is 16 Feb 2026

microbiologysociety.org/who-we-are/j...

28.01.2026 08:44 — 👍 9    🔁 19    💬 0    📌 0

To those American academics out there who have chosen to remain silent/mostly silent about the horror going on in the USA these days at every corner of the federal government, please start speaking out and fighting back.

25.01.2026 04:33 — 👍 193    🔁 45    💬 2    📌 0
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Hello world! I am excited to announce my lab is open at the University of Utah in the Department of Biochemistry. We are looking for scientists at all levels interested in studying host-virus interactions in both bacteria and animals. Come join us in beautiful Utah! (photo is 10 steps from lab)

22.01.2026 22:06 — 👍 72    🔁 31    💬 6    📌 0
CRISPR2026.

The CRISPR 2026 website is up! Links for abstract submission and registration will be available February 1st: web.cvent.com/event/ac20b6...

23.01.2026 22:53 — 👍 4    🔁 3    💬 0    📌 0

All the best Sam!

22.01.2026 18:46 — 👍 1    🔁 0    💬 0    📌 0

Congrats, richly deserved!

22.01.2026 18:41 — 👍 4    🔁 0    💬 1    📌 0

Our latest CRISPR ring nuclease paper focusses on Csx15 - which seems to act as of a sponge as well as a canonical phosphodiesterase. Great work led by @haotianchi.bsky.social

www.biorxiv.org/content/10.6...

22.01.2026 08:57 — 👍 36    🔁 20    💬 0    📌 0

Makes more sense

21.01.2026 21:38 — 👍 3    🔁 1    💬 1    📌 0
Research Professional Sign-in

UKRI pauses several funding calls amid priorities shake-up

The applicant-led MRC funding calls on pause include research grants, partnership grants and new investigator research grants made available through the council’s research boards.

www.researchprofessional.com/news-article...

19.01.2026 17:24 — 👍 4    🔁 17    💬 4    📌 2
A methylome-derived m6-dAMP trigger assembles a PUA-Cal-HAD immune filament that depletes dNTPs to abort phage infection Bacteria must distinguish phage attack from normal homeostatic processes, yet the danger signals that trigger many defence systems remain unknown. Here, we show that a PUA-Calcineurin-CE-HAD module from Escherichia coli ECOR28 confers broad anti-phage protection by binding Dam-methylated deoxyadenosine monophosphate (m6-dAMP) generated during phage-induced chromosome degradation. Ligand binding converts a preassembled PUA-Calcineurin-CE hexamer loaded with six HAD phosphatases into a polymerising filament. The filament acts as a high-flux dNTP sink through a two-enzyme cascade: HAD first dephosphorylates dATP to dADP, and Calcineurin-CE then converts dADP to dAMP. dNTP collapse halts phage replication and enforces abortive infection. Multiple mobile-element DNA mimic proteins block filament assembly, revealing a direct phage counter-defence. More broadly, our findings extend a conserved, cross-kingdom paradigm of immune filament assembly to nucleotide-depletion antiviral defence and suggest modified-nucleotide sensing by related PUA-Calcineurin-CE modules as a widespread, underappreciated bacterial strategy. ### Competing Interest Statement The authors have declared no competing interest. NIHR Southampton Biomedical Research Centre, https://ror.org/01qqpzg67, Postdoctoral Bridging Fellowship F.L.N. is supported by a Wessex Health Partners (WHP) and National Institute for Health and Care Research Wessex Experimental Medicine Network (NIHR WEMN), Seed fund National Institutes of Health, GM145888, U24 GM129539) Maloris Foundation Memorial Sloan Kettering Cancer Center, P30-CA008748 Simons Foundation, SF349247 New York State Assembly

Preprint out: We characterise PUA-Cal-HAD, a widespread bacterial antiphage defence family. An infection cue switches a preassembled complex into an immune filament that drains dNTPs via a coupled two-enzyme cascade, and phage DNA mimics can block filament assembly (anti-polymerisation).

17.01.2026 14:52 — 👍 34    🔁 19    💬 1    📌 0

'After assessing the DMC’s recommendations and conducting an internal analysis of unexpectedly high rates of adverse events, the Company has elected to discontinue the trial'

16.01.2026 16:45 — 👍 0    🔁 1    💬 0    📌 0
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A phage protein screen identifies triggers of the bacterial innate immune system Nature Microbiology, Published online: 16 January 2026; doi:10.1038/s41564-025-02239-6A library of 400 phage protein-coding genes is used to find a trove of antiphage systems, revealing systems that target tail fibre and major capsid proteins.

Out Now! A phage protein screen identifies triggers of the bacterial innate immune system #MicroSky

16.01.2026 16:53 — 👍 46    🔁 28    💬 0    📌 2
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Genomic clues to the origin of eukaryotic cells How did eukaryotic cells with complex architecture evolve from simpler prokaryotic cells? DNA analyses offer possible answers.

How did eukaryotic cells with complex architecture evolve from simpler prokaryotic cells? DNA analyses offer possible answers @nature.com
www.nature.com/articles/d41...
www.nature.com/articles/s41... @bristoluni.bsky.social
www.nature.com/articles/s41...
www.nature.com/articles/s41...

15.01.2026 16:43 — 👍 27    🔁 18    💬 1    📌 0

As no reflection at all on the excellent organisers or the excellence of this meeting. There is not a force in nature that would make me travel to the USA for a scientific meeting right now.

14.01.2026 20:54 — 👍 23    🔁 2    💬 2    📌 0

8–11 June 2026 | 📍 Heraklion, Crete 🇬🇷

Get ready for Machines on Genes 2026, the 94th Harden Conference by the @biochemsoc.bsky.social — four days of molecular mechanisms and friendly discussions! 🧬☀️🔬❄️

Organised by @lapassmore.bsky.social, Dana Branzei, me.

09.01.2026 10:14 — 👍 15    🔁 11    💬 1    📌 0

The Biochemical Journal offers a rapid decision on your submission and expert academic editors. All proceeds are used to support the academic community. Please get in touch if you'd like to discuss a potential submission!

14.01.2026 12:07 — 👍 0    🔁 0    💬 0    📌 0
Biochemical Journal | Portland Press Exploring the molecular mechanisms that underpin key biological processes, the Biochemical Journal is a leading bioscience journal publishing high-impact scientific research papers and reviews in the ...

Pleased to announce that I've joined the editorial board of the Biochemical Journal portlandpress.com/biochemj as an associate editor. I'd love to receive manuscripts focussed on CRISPR, anti-viral defence, archaean biochemistry and nucleic acid processing enzymes.
@biochemsoc.bsky.social

14.01.2026 12:07 — 👍 17    🔁 5    💬 1    📌 0

The USA we knew and admired is disintegrating before our eyes.

08.01.2026 20:02 — 👍 3    🔁 0    💬 0    📌 0
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Phage-associated Cas12p nucleases require binding to bacterial thioredoxin for activation and cleavage of target DNA www.nature.com/articles/s41...

04.01.2026 05:56 — 👍 18    🔁 8    💬 0    📌 0
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Large-scale analysis of bacterial genomes reveals thousands of lytic phages - Nature Microbiology Diverse genomes of lytic phages are found in bacterial assemblies, challenging assumptions about the nature of the lytic lifestyle.

#microsky #phagesky #phage

www.nature.com/articles/s41...

29.12.2025 17:08 — 👍 33    🔁 10    💬 1    📌 2
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High-throughput transposon mutagenesis defines the essential genome of diverse phages Phages are important drivers of bacterial evolution with therapeutic potential as antimicrobials. However, gaps in our understanding of phages and our inability to rapidly engineer them with new genet...

#microsky #phagesky

The 3rd (? Lost track!) manuscript on a CRISPR/anti-CRISPR -based transposon tool to study gene essentiality in #phages

www.biorxiv.org/content/10.6...

21.12.2025 05:01 — 👍 28    🔁 7    💬 0    📌 0

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