GitHub - AlexHego/DL-pixel-classification Contribute to AlexHego/DL-pixel-classification development by creating an account on GitHub.

Great to see @alexhego.bsky.social share instructions on a DL pixel‑classification problem we worked on at image.sc. If you’re working on a challenging 3D DL semantic‑segmentation problem and need more options than most tools provide, check out this repository. github.com/AlexHego/DL-...

21.07.2025 18:41 — 👍 22    🔁 10    💬 1    📌 1

Next #GloBIAS seminar coming up. Curtis Rueden will present on 'Fiji with Python power'. To get the link please register here: www.globias.org/activities/b...

19.05.2025 16:22 — 👍 14    🔁 9    💬 0    📌 1

I regret to announce that the meme Turing Test has been passed

LLMs produce funnier memes than the average human, as judged by humans. Humans working with AI get no boost (a finding that is coming up often in AI-creativity work) The best human memers still beat AI, however. arxiv.org/abs/2501.11433

17.03.2025 00:34 — 👍 110    🔁 26    💬 8    📌 16

Schematic overview on how MicroSpit operates. It can split superimposed structures in fluorescent image channels by using a suitably trained AI.

Concrete example for how MicroSplit unmixes four superimposed structures.

Immagine you could image two cellular structures in the same fluorescent channel and still reliably get them separated afterwards…
What would you do with this?

Now… what would you do if that also worked with 4 structures at once? 👇 #MicroSplit #preview🧵

08.02.2025 07:49 — 👍 108    🔁 38    💬 6    📌 3

🚨 Save the Date! 🚨
AI4Life & @globias.bsky.social are hosting a 4-part webinar series to showcase AI4Life services and lessons learned.

📅 When: Feb 13, Apr 10, Jun 12, Aug 14
🖥️ How: Online | 🎥 Recorded
🔗 Registration: bit.ly/registration...

28.01.2025 14:33 — 👍 32    🔁 23    💬 1    📌 4

Our work, MedicoSAM, is now on arXiv! We study finetuning SAM for medical images. MedicoSAM improves over SAM and models derived from it, especially for interactive segmentation, see examples in the figure. Preprint at arxiv.org/abs/2501.11734.
Read on for a summary. @anwaiarchit.bsky.social

22.01.2025 10:59 — 👍 30    🔁 9    💬 1    📌 1

Call 4 Help Pilot Event by GloBIAS, 22 Jan–5 Feb 2025! Offering life scientists a chance for hands-on guidance & support for #bioimage_analysis using Napari, Ilastik & CellProfiler.
💡 Details: www.globias.org/activities/c...
🔗 Sign up! Application until Friday 17 Jan: forms.gle/7hsJgramrFXB...

13.01.2025 13:49 — 👍 25    🔁 22    💬 0    📌 4

Still relevant! Back in 2021, I made this GIF ( a movie on Bluesky because I don’t know how to publish GIF) to help researchers decide between confocal Airyscan 1 and SIM for imaging S. aureus. #Microscopy #fluorescence #confocal #airyscan #Elyra

02.12.2024 11:22 — 👍 6    🔁 0    💬 1    📌 0

Sorry for the credit I screen it few month ago and I forget to save the entire post. 🤦‍♂️.

30.11.2024 15:08 — 👍 0    🔁 0    💬 1    📌 0

Thank you for your animation!! It’s so helpful

30.11.2024 15:04 — 👍 1    🔁 0    💬 0    📌 0

Do you have any ressources to teach spatial analysis, eCDF, Ripley function, clustering algorithms Tsne, UMAP, etc
And what did you use QuPath, CytoMAP, Python, R ? #BiaTools #Globias #spatial #clustering #Neubias

27.11.2024 09:01 — 👍 1    🔁 0    💬 1    📌 0

I got inspired by @guijacquemet.bsky.social's idea of making regular posts on #bioimageanalysis tools and tips under #BIATooloftheday. Will try to complement his suggestions with as little overlap as possible under #BIAToolTip with a focus on #Fiji and #ImageJ and friends.
In the hope it helps

16.11.2024 14:33 — 👍 38    🔁 8    💬 2    📌 3

Twitter is so empty these days, I thought I heard an echo… So I joined Bluesky yesterday.

15.11.2024 07:57 — 👍 6    🔁 0    💬 1    📌 0

Im too late ?

13.11.2024 17:17 — 👍 0    🔁 0    💬 2    📌 0