AMRnet: a data visualization platform to interactively explore pathogen variants and antimicrobial resistance
Abstract. Antimicrobial resistance (AMR) poses a substantial threat to global public health. Whole genome sequencing is increasingly used as a core method
๐จ New paper out on @narjournal.bsky.social.
Many thanks to everyone involved, especially the project leader Professor @katholt.bsky.social and the wonderful #AMRnet team: @msmicrobiocode.bsky.social, Vandana Sharma, Mary Maranga, Ebenezer Foster-Nyarko, Megan Carey
academic.oup.com/nar/advance-...
06.11.2025 19:33 โ ๐ 5 ๐ 4 ๐ฌ 0 ๐ 0
Dr. Jane Goodall filmed an interview with Netflix in March 2025 that she understood would only be released after her death.
05.10.2025 09:08 โ ๐ 38210 ๐ 17082 ๐ฌ 820 ๐ 2410
๐๐
04.09.2025 01:03 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
In collaboration with UN Women @unwomen.bsky.social we are dedicated to strengthening the current positive status quo of the movement. Our commitment remains unwavering!
02.07.2025 12:32 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
World Oceans Day ๐ ๐ @un.org @sylviaearle.bsky.social
08.06.2025 13:14 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
07.06.2025 22:57 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
after my 40th birthday always ๐
๐คฆ๐ปโโ๏ธ reduced when I added yoga and meditation, got improved 90% the tiredness! Take a rest ๐ซ
07.06.2025 10:35 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
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Rain forest alliance!
05.06.2025 21:50 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
Erik Simรตes - So proud my friend! Saving lives in deep Amazon. We should buy more planes. Amazon Sentinel!
25.05.2025 13:56 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
The importance of a preserved environment is a source of food, clean water, spirituality and health.
25.05.2025 13:49 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
After 1 hour by plane and 3 hours by boat and a walk! They arrived to vaccinate indigenous people in remote areas. Eric, you are fantastic... only those who live this reality up close know the size of this effort.
25.05.2025 13:39 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
A huge thank you to all involved - especially members of the Global Typhoid Genomics Consortium, @katholt.bsky.social , @meganecarey.bsky.social , @louisecerdeira.bsky.social, and Vandana Sharma!
09.05.2025 13:18 โ ๐ 4 ๐ 1 ๐ฌ 0 ๐ 0
I miss my grandparents, born in Barcarena, a town near Belรฉm in the Amazon, of humble origins. They earned their living from harvesting crops from sunrise to sunset and sailing from river to river to pay for my father and his brothers' studies. What drives my research? My roots!
18.02.2025 10:13 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
15.02.2025 17:30 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
Absolute gold-standard work here. For your #Acinetobacter and #Klebsiella needs, upgrade to Kaptive 3 today!
1) More accurate capsule predictions on poorer quality genomes
2) Sets a precedent for how to build a systematic and robust capsule database
3) ~1 second per genome
09.02.2025 10:07 โ ๐ 5 ๐ 2 ๐ฌ 0 ๐ 0
The War on Science (Feb 2025 teach-in draft)
The War on Science Whatโs happening? What can we do about it? An interactive teach-in for biomedical researchers Please share, modify, and repurpose this template presentation (with credit). Good luck...
Made some slides for scientists to talk about what's been happening & what we should do next. There are probably many people better qualified than me to talk about these issues. If that's you, please, please, please consider holding some virtual advocacy training sessions for researchers this week.
10.02.2025 06:30 โ ๐ 238 ๐ 136 ๐ฌ 17 ๐ 12
No romanticism! Helping those most in need, combating the advance of AMR, neglected tropical diseases, pollution, climate change will be fights in which I will act as a nature warrior using my scientific knowledge, IT, AI, data integration and renewable energy.
01.02.2025 18:16 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
Only a dreamer girl
18.06.2024 19:40 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
I want to change this design and connect two women by hand slightly.
โGive me your hand, and I can help/support you up the stairs.โ
โTrue sisterhood is necessary, and it helps us to share both the light and dark parts of our journey.โ
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Garden time ๐ฅฐ๐๐น๐บ๐ธ๐ผ๐ป
15.06.2024 08:17 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
15.06.2024 08:16 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
weekend without sick toddler ๐ฎโ๐จ๐
18.03.2024 06:41 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
Happy Valentine ๐ฉโโค๏ธโ๐ฉ
14.02.2024 11:45 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
When knowledge comes together and technologies from different cultures combine, we find the true meaning of caring ๐ค๐ฉต๐ By Erik Jennings and Kitรก Zoรฉ
05.01.2024 16:44 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
01.01.2024 02:26 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
Bringing together data science expertise across LSHTM to tackle the biggest global health problems.
Nucleic Acids Research (NAR), from Oxford University Press, publishes the results of leading-edge research into physical, chemical, biochemical and biological aspects of nucleic acids and proteins involved in nucleic acid metabolism and/or interactions
Web development, data management and visualizations. Consulting services for scientific and r&d communities. https://www.researchelements.org/
Associate Professor
DFCI & HMS
Bioinformatician at the Centre for Pathogen Genomics at the University of Melbourne
researching viral pathogen genomics at @lshtm.bsky.social | theo.io / sandersonlab.org
Infectious disease modeller, associate professor at the London School of Hygiene and Tropical Medicine.
Epidemiologist/mathematician. Professor at London School of Hygiene & Tropical Medicine. Author of The Rules of Contagion and The Perfect Bet. Views own.
New book Proof: The Uncertain Science of Certainty available now: proof.kucharski.io
Epidemiology (infectious disease modelling) at
@cmmid-lshtm.bsky.socialโฌ
I get excited about collaborative science, science history, London, bread, tomatoes, and trees.
kathsherratt.github.io/kathsherratt
Research Fellow analysing multi-pathogen wastewater data and developing maths/stats models for polio eradication. Previously RSE at Epiverse TRACE Initiative. https://jamesmbaazam.github.io/ #rstats
Bringing together global expertise, knowledge, research and teaching to help humanity adapt faster to outbreaks of disease.
Inspiring innovation in antimicrobial resistance research through interdisciplinary and international engagements | Twitter: @LSHTM_AMR | Website: www.lshtm.ac.uk/research/centres/amr
I write Popular Information, an independent newsletter dedicated to accountability journalism. | judd@popular.info | Signal: juddlegum.47
Popular.info
Science integrity consultant and crowdfunded volunteer, PhD.
Ex-Stanford University. Maddox Prize/Einstein F Award winner
NL/USA/SFO.
#ImageForensics
@MicrobiomDigest on X.
Blog: ScienceIntegrityDigest.com
Support me: https://www.patreon.com/elisabethbik
Microbiologist, Professor at University College Dublin
One Health | Wastewater Based Epidemiology | AMR | Water Quality | Microbial Source Tracking | Host Pathogen Interaction | Rhodococcus equi
https://people.ucd.ie/wim.meijer
Evangelist for the study of evolution in action by everyone.
Pitt Prof | EvolvingSTEM | biofilms | EvMed | genomics entrepreneur (@SeqCoast.bsky.social, @midauthorbio.bsky.social) | ASM President-Elect | exercise addict ~ swim bike run
Organizational psychologist @Wharton. #1 NYT bestseller: THINK AGAIN. Podcasts: Re:Thinking & WorkLife. Diver. Arguing like Iโm right, listening like Iโm wrong.
Fighting mental health stigma and toxic research culture. Proud to support https://twloha.com/.
And when life gives you lemons, make a G&T.
She/Her
Computational biologist. Geriatric Millennial. Professor, University of Cambridge. Director of Data Sciences, Baker Heart & Diabetes Institute. British | Australian | American.
www.inouyelab.org | Cambridge, UK
Public health (meta)genomics & bioinformatics, Prof @unibirmingham.bsky.social, Director @imibirmingham.bsky.social & @climb.ac.uk