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Caroline Puente-Lelievre

@cpuentelelievre.bsky.social

Research fellow @aucklanduni.bsky.social Structural phylogenetics #strphylo protein evolution, plant systematics

42 Followers  |  48 Following  |  24 Posts  |  Joined: 18.12.2023  |  2.0733

Latest posts by cpuentelelievre.bsky.social on Bluesky

SMBE 2026 | Registration is open

SMBE 2026 | Registration is open

Registration is now open for SMBE 2026!

Head over to the registration page to find all the details and secure your spot πŸƒβ€β™€οΈ

πŸ“ smbe2026.org/registration
🐦 Early-bird deadline: March 31, 2026

If you are an active member of the SMBE you can register for the meeting with discounts.

#SMBE2026

03.11.2025 11:09 β€” πŸ‘ 10    πŸ” 7    πŸ’¬ 1    πŸ“Œ 0

I’m so excited and impressed with the abstracts we have received so far. Looking forward to the talks!

03.11.2025 05:48 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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February 2026 is shaping up to be the month for protein science down under!

Lorne (Feb 8–12) @lorneproteins.bsky.social

APSPM 2026, Brisbane (Feb 15–18)
biosig.lab.uq.edu.au/strphy26/str...

Two meetings and a summer of great science!

@strphy.bsky.social

@official-smbe.bsky.social

30.10.2025 03:49 β€” πŸ‘ 3    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

You can become an expert after the meeting!
@official-smbe.bsky.social

30.10.2025 01:00 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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We can’t wait to welcome you to sunny Brisbane. Home to world-class research and a vibrant scientific community. Join us at the University of Queensland for #APSPM2026 to discuss how protein structure and evolution come together #StrPhy26

27.10.2025 05:01 β€” πŸ‘ 5    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
Infographic on the chemistry of pumpkins. The colour of pumpkins is due to carotenoid compounds such as beta-carotene, the same compound that gives carrots their orange colour. The vegetal aroma of pumpkins is mainly due to cis-3-hexen-1-ol, along with other six-carbon alcohols and aldehydes. Canned pumpkin is often not the same type of pumpkin as those used for carving, and consequently, the aroma compounds differ, including burnt-smelling 2-methylbutanal, coffee furanone, and furfural. Pumpkin spice flavour has little to do with pumpkin and more to do with the spices added, including cinnamon, nutmeg and clove.

Infographic on the chemistry of pumpkins. The colour of pumpkins is due to carotenoid compounds such as beta-carotene, the same compound that gives carrots their orange colour. The vegetal aroma of pumpkins is mainly due to cis-3-hexen-1-ol, along with other six-carbon alcohols and aldehydes. Canned pumpkin is often not the same type of pumpkin as those used for carving, and consequently, the aroma compounds differ, including burnt-smelling 2-methylbutanal, coffee furanone, and furfural. Pumpkin spice flavour has little to do with pumpkin and more to do with the spices added, including cinnamon, nutmeg and clove.

It's #NationalPumpkinDay! πŸŽƒ

Why are pumpkins orange, and what do pumpkins have to do with pumpkin spice? Here are the chemical answers in @cenmag.bsky.social: cen.acs.org/articles/93/...

#ChemSky πŸ§ͺ

26.10.2025 20:50 β€” πŸ‘ 161    πŸ” 77    πŸ’¬ 2    πŸ“Œ 2
Preview
APSPM 2026: Structural Phylogenetics Meeting A pivotal SMBE regional meeting in Brisbane on the interface of protein structure, function, and evolution.

Abstract submissions are open for #APSPM2026!
πŸ—“οΈ Deadline: Nov 28, 2026
πŸ“ Brisbane + online
πŸŽ“ Travel grants for students & ECRs
Join us to explore how protein structures and AI are reshaping evolutionary biology.

@official-smbe.bsky.social

#StrPhy26 #StrPhy

24.10.2025 04:06 β€” πŸ‘ 3    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

The conference will be held on the beautiful St Lucia campus of The University of Queensland. Plenary speakers are @joannamasel.bsky.social (University of Arizona, USA) and Nicholas Matzke (University of Auckland, NZ).

Registration is free, but spaces are limited to 50 in-person attendees.

22.10.2025 10:20 β€” πŸ‘ 2    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

Structural phylogenetics is poised to reshape our understanding of molecular evolution. While the availability of structural data has exploded, its integration into evolutionary analysis has yet to reach its full potential. This meeting provides a timely forum to explore this frontier.

22.10.2025 10:20 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
Preview
APSPM 2026: Structural Phylogenetics Meeting A pivotal SMBE regional meeting in Brisbane on the interface of protein structure, function, and evolution.

We are excited to announce APSPM 2026 - the SMBE Australasian Protein Structural Phylogenetics Meeting!

πŸ—“οΈ 15-18 Feb. 2026
🌏 Brisbane, Australia

πŸ”— biosig.lab.uq.edu.au/strphy26/

πŸ“„ Abstract submission: 28.11.2025
✈️ Travel grant application: 28.11.2025
✏️ Registration: 15.01.2026

#StrPhy26

22.10.2025 10:20 β€” πŸ‘ 9    πŸ” 9    πŸ’¬ 1    πŸ“Œ 0

Registration is now open! Limited spots so register fast. We also have generous travel grants. We’d love to see attendees from all career stages and backgrounds. #StrPhy26 @official-smbe.bsky.social

22.10.2025 08:41 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Inference of Cytochrome P450 Evolutionary History Using Structural and Physicochemical Metrics Abstract. Cytochrome P450s are a superfamily of heme-binding monooxygenases involved with the detoxification of intrinsic and extrinsic toxins. They are ne

New in the #StructuralPhylogenetics special section:
Dixson et al. show that structural and physicochemical features of proteins uncover remote evolutionary relationships and provide a new toolset to revisit mitochondrial enzyme evolution.
@genomebiolevol.bsky.social

15.10.2025 22:52 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Follow this account for updates on the upcoming SMBE Australasian Protein Structural Phylogenetics Meeting #APSPM

10.10.2025 22:15 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
The case for useless knowledge | BetΓΌl KaΓ§ar
YouTube video by The Well The case for useless knowledge | BetΓΌl KaΓ§ar

The case for useless knowledge by BetΓΌl KaΓ§ar. In this 3 minute video she explains why the simple act of being curious and asking questions (without needing a reason) is one of the most powerful things a human can do. www.youtube.com/watch?v=J2k3...

08.10.2025 22:01 β€” πŸ‘ 13    πŸ” 6    πŸ’¬ 0    πŸ“Œ 1
Picture of the sea from Waiheke Island.

Picture of the sea from Waiheke Island.

The next NZ Phylogenomics Meeting will be in Waiheke Island (a short ferry trip away from Auckland City) on February 10 - 13, 2026. It combines maths, computer science, statistics, and biology for phylogenetics, genome analysis and molecular evolution. compevol.github.io/Waiheke2026/

08.10.2025 21:50 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Save the date! the SMBE Australasian Protein Structural Phylogenetics Meeting #APSPM will take place on 15 - 18 February, 2026 at the University of Queensland in Brisbane, Australia. More details coming up soon. Registration will be free thanks to the generous support of @official-smbe.bsky.social

07.10.2025 22:46 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

The protein structure era!

07.10.2025 22:36 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

The earliest animals may have been sea sponges. MIT team found chemical fossils (>541M yrs old steranes) pointing to ancient demosponges.

01.10.2025 03:23 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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SMBE IDEA 2026 call for proposals SMBE, through the IDEA (Inclusion, Diversity, Equity and Access) task force, aims to address systemic racism, sexism, colonialism and other exclusion in our SMBE society. With this in mind, SMBE has m...

LAST CHANCE FOR PROPOSAL SUBMISSION!

SMBE IDEA 2026
Supporting intiatives tackling inequities in evolutionary biology

We have funding in:
πŸ’‘ Inclusion, Diversity, Equity and Access ($25k)
πŸͺ‚ Non-Parachute Science ($10k)
πŸ—£οΈ Outreach ($10k)

πŸ“… Deadline: Oct 10, 2025
docs.google.com/forms/d/e/1F...

30.09.2025 14:13 β€” πŸ‘ 5    πŸ” 6    πŸ’¬ 1    πŸ“Œ 1

Open-source GPU-accelerated MMseqs2 makes protein homology search & structure prediction a lot faster. It will redefine the way we handle large-scale sequence & structure analyses.

24.09.2025 04:00 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Protein structural phylogenetics - Wikipedia

A wikipedia page on structural phylogenetics! en.wikipedia.org/wiki/Protein...

24.09.2025 03:54 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Already looking forward to SMBE2026 in Copenhagen! @official-smbe.bsky.social

17.09.2025 23:24 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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IDEA Initiatives SMBE, through the IDEA (Inclusion, Diversity, Equity, and Access) Task Force, aims to address systemic racism, sexism, colonialism, and other exclusion in our society. SMBE DIVERSITY STATEMENT Our goa...

🌍✨ SMBE IDEA 2026 – Call for Proposals!

We support initiatives that tackle inequities in evolutionary biology.

Funding available:
πŸ’‘ IDEA ($25k)
πŸͺ‚ Non-Parachute Science ($10k)
πŸ—£οΈ Outreach ($10k)

πŸ“… Deadline: Oct 10, 2025
πŸ”— docs.google.com/forms/d/1we2...

10.09.2025 21:35 β€” πŸ‘ 9    πŸ” 7    πŸ’¬ 1    πŸ“Œ 0

Fluorescently tagging the flagellar stator without disrupting its function will enable real-time observation of these molecular motors in action and provide unique and novel insights into bacterial motility. @phatmattbaker.bsky.social @unswbabs.bsky.social

17.09.2025 23:18 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

This is such a fun competition!

17.09.2025 00:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Getting ready to submit my abstract on protein structure evolution. Looking forward to attending to this meeting! @lorneproteins.bsky.social

16.09.2025 23:59 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

This review highlights how structural phylogenetics and time-dependent rate Bayesian models provide new tools to uncover deep viral evolution beyond outbreak timescales.

16.09.2025 03:42 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Thank you @claudiaalcar.bsky.social for contributing to the special section in structural phylogenetics @genomebiolevol.bsky.social conserved motifs across different protein folds reveal deep evolutionary relationships. Folds don’t just mutate, they swap domains, permute, lose/gain motifs.

16.09.2025 03:24 β€” πŸ‘ 5    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Puente-Lelievre et al. have systematically reviewed how protein structures can be used to trace evolutionary histories. This rapidly advancing field has not yet caught up with the burgeoning databases of high quality protein structure predictions provided by AlphaFold and other tools.

Puente-Lelievre et al. have systematically reviewed how protein structures can be used to trace evolutionary histories. This rapidly advancing field has not yet caught up with the burgeoning databases of high quality protein structure predictions provided by AlphaFold and other tools.

In a new GBE Review, @cpuentelelievre.bsky.social @proteinmechanic.bsky.social & J. Douglas give an overview on protein structural phylogenetics, how to obtain evolutionary insights from structural data, and key applications and future directions.

πŸ”— doi.org/10.1093/gbe/evaf139

#genome #evolution

26.08.2025 16:30 β€” πŸ‘ 14    πŸ” 8    πŸ’¬ 0    πŸ“Œ 0

Our new paper shows the power of combining phylogenetics + protein structure to uncover the evolution and diversification of bacterial motility. Thanks to all the authors and HFSP for funding this work. @phatmattbaker.bsky.social @hfspo.bsky.social

10.09.2025 22:40 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

@cpuentelelievre is following 20 prominent accounts