Happy to share that ShapeEmbed has been accepted at @neuripsconf.bsky.social π SE is self-supervised framework to encode 2D contours from microscopy & natural images into a latent representation invariant to translation, scaling, rotation, reflection & point indexing
π arxiv.org/pdf/2507.01009 (1/N)
23.09.2025 08:31 β π 71 π 26 π¬ 3 π 5
So squeezed it can barely move π¦
Some TIRF imaging of fibroblast, tagged with lifeact-GFP. Any guesses why the cell so bleby? πποΈ
14.11.2025 18:51 β π 0 π 0 π¬ 0 π 0
FIB-SEM dataset visualized with Microscopy Nodes, data from Mocaer et al 2023
Microscopy Nodes is now up on bioRxiv! π
This is a Blender extension that seamlessly integrates and visualizes 3D microscopy data (TIF & @zarr.dev).
High-quality volume rendering for anyone, in both EM and fluorescence, regardless of computational expertise! π¬
www.biorxiv.org/content/10.1...
15.01.2025 13:39 β π 333 π 124 π¬ 9 π 12
20.12.2024 12:44 β π 0 π 0 π¬ 0 π 0
Tried dynamic micropatterning last week!
These 3t3s donβt polarise as nicely as the beautiful movies from @ivaskalab.bsky.social but they still look fun! π³
More to come next year ! ππ
20.12.2024 12:44 β π 2 π 0 π¬ 1 π 0
Anna Kreshuk's lab and the team behind ilastik write here about their latest research in machine learning for microscopy. Also, new ilastik features and releases get announced here! @EMBL
Biophysics / Cell Migration / Active matter / Mechanobiology
https://mpzpm.mpg.de/research/benoit-ladoux
https://ladoux-mege-lab.cnrs.fr
Our lab unravels the mechanobiology and cellbiology of immune cells, their migration & cytoskeleton, their organelles, and their cell-matrix interplay using #imaging, #screening, and #bioengineering
@bmc-lmu.bsky.social
www.renkawitz-lab.com
Cancer cell biologist, Research Associate @Clare Waterman lab, Blebs are life or death!!! LOVE to torture..Oops confine cells.. All about cell migration π views are my own, not of employer
Prof at University of Bern
#MAPK #Rho #optogenetics #biosensors #computer_vision
skiing, rock/ice/mountain climbing when I have time
ICREA Research Professor at Universitat de Barcelona. Research Group Leader at MPI-PKS and CSBD in Dresden. Theory of living matter. Collective phenomena in biology through the lens of active matter physics.
Structural Biology | CryoET | PhD student at Simone Mattei Lab (@embl.org) I Former Bonnie Murphy Lab (MPI Biophysics @mpibp.bsky.social) | BSc./MSc. Richard Garratt Lab & MBA Project Management (@uspoficial.bsky.social)
Cell and developmental biologist fascinated by forces, signaling and fate π¦π New PI @IMPvienna @viennabiocenter
PhD student @EMBL, Diz MuΓ±oz Lab
Curious about how T cells move
Group Leader @EMBLBarcelona | PD @TheCleversLab | PhD @MITBiology (Jacks lab) | B.A. @NewCollegeofFL | She/her | π΅π·πΊπΈπͺπΊ| #Organoids, #Neuroendocrine cells
Studies how to build tissues. Cell developmental biology and biophysics of mucociliary epithelia.
Group leader at reNEW, University of Copenhagen.
https://renew.ku.dk/research/sedzinski_group/
Check out Microscopy Nodes for handling microscopy data in Blender! Now loading .tif and OME-Zarr with big volume support :)
she/her | IPA: ΛafkΙ Ι‘rΙs
Interested in how cells use genes to create shape, form and function in #embryos as well as in Societal Wellbeing
#NotInTheGenes #InNumbersWeTrust #gastruloids #gastrulation
Postdoc @PoLDresden & @MPI-CBG
PhD @EMBL
π«§π¬
We study how mechanics at the cell periphery govern function, with a focus on morphogenesis, migration, and fate in animal cells. @EMBL.
Tweets by Lab Members.
Cell biologist interested in cancer, in love with the archipelago and good books
Research group interested in everything around cancer and integrins (more details on our website!). Posts by Ivaska Lab members.
Website: https://ivaskalab.utu.fi/
Lecturer in Biological Physics at King's College London @kingsnmes.bsky.social
Previously at Institute of Science and Technology Austria, UCL and UniversitΓ© Paris-Saclay.
Understanding life. Advancing health.
