Nadia Davidson

Hi bioinformatics, genomics and CS friends! Please help me spread the word. I'm hiring a postdoc! Come work on cutting edge method development in algorithmic genomics with me and my group at @umdscience.bsky.social! 🖥️🧬

Inspired by our own (@rhea-longley.bsky.social) complex calculations, we hope this will save some valuable time ⏱️ for others!

Disclaimer: please remember to check the results with your grants team and the grant application guidelines.

Feedback is more than welcome! 📝

It was design with NHMRC Investigator Grant Applications in mind, but can be used for lots of purposes, like calculating the cut-off date for publication going backwards in time or when you fall out of eligibly for grants/awards based on post-PhD years.

Researchers, if you have career disruptions e.g. parental leave 👶, and would like a simple way to calculate full-time equivalent (FTE) years you might like our new calculator, eramezani.github.io/career/ - Written by @eramezani.bsky.social‬ 🙌. Feel free to share around.

Postdoctoral Research Fellow, Population Genomics - Townsville, QLD, Australia James Cook University (JCU) is creating a brighter future for life in the Tropics and beyond, through education and research that makes a difference locally and globally.  We now have an opportunity a...

We @marine-omics.bsky.social are hiring. We're looking for a postdoc in population genomics. @janstrugnell.bsky.social careers.jcu.edu.au/jobs/postdoc...

Haha, the thought trail...

Seems like LLM might not be the best for that sort of thing, or at least not yet. Out of interest did you try any of the models that do reasoning?

This is disappointing to learn... absolutely no hope for the future of humans. Although, names are pretty tricky, so I'll forgive it that.

Is there an AI that can rewrite CVs according to the needs of each grant application? Genuinely interested. Imagine how much research we could do if we weren't reformatting CVs constantly.

An Analysis presents benchmarking results from the Singapore Nanopore Expression consortium project, plus a valuable resource of datasets generated from various long-read and short-read RNA sequencing technologies.
@jonathangoeke.bsky.social @astar-gis.bsky.social
www.nature.com/articles/s41...

Come and set up a lab and work with us at @petermaccc.bsky.social

Isoform-level discovery, quantification and fusion analysis from single-cell and spatial long-read RNA-seq data with Bambu-Clump Single cell and spatial transcriptomics have dramatically changed how we can profile RNA from heterogenous biological samples. Combining single cell and spatial profiling with long read RNA-Seq promis...

Very happy to release the single cell and spatial long read RNA seq module for our transcript discovery and quantification tool Bambu (Bambu-clump)

www.biorxiv.org/content/10.1...

Our new paper examining how to analyse longread RNA-seq with no reference genome. We compare approaches for assembly and downstream analysis, from transcript accuracy to differential expression. Lead by @alexyfyf.bsky.social. Thnx to all contributors incl. @qgouil.bsky.social for the pea data!

Towards accurate, reference-free differential expression: A comprehensive evaluation of long-read de novo transcriptome assembly Long-read RNA sequencing has significantly advanced transcriptomics by enabling the full length of transcripts to be assessed. However, current analysis methods often depend on a high-quality referenc...

No genome, no problem!
Check out @nadia-davidson.bsky.social and Alex Yan’s benchmark of reference-free Diff Expr. Helping us out with our 🌱 transcriptomes!
www.biorxiv.org/content/10.1...

Happy new year's eve from Melbourne. Here's a count down created by my 9yo. scratch.mit.edu/projects/111...

My career trajectory is starting to make sense.

Bet it works in reverse too. Everytime you hear a talk on long lashes... ah I mean long read, you'll think about visiting chemist warehouse.

HELLO Blue Sky! I have arrived, and am looking forward to all the love, nice smelling roses, cute baby animal, amazing science etc.... and hopefully some civilized human interactions too.