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Jonathan Taylor

@jtimaging.bsky.social

Optical physicist tackling biomedical imaging and measurement problems with realtime computation, maths and computational imaging

149 Followers  |  119 Following  |  41 Posts  |  Joined: 24.12.2024  |  2.1727

Latest posts by jtimaging.bsky.social on Bluesky

"emphasis on usability and maintainability will not only cultivate researchers who naturally think in terms of clean code but also equip them with transferable skills that are valuable in any industry". To get students on board & doing this out of choice, they must see benefits for themselves [3/3]

27.07.2025 14:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Very much on my mind as I revamp a course on software development practive for STEM: "Currently, STEM undergraduates learn to program on toy problems. These do not adequately prepare one to deal with sprawling code bases that they will encounter in practice [...]" [2/3]

27.07.2025 14:00 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

A thoughtful account of why version control is essential for research software: "achieving the highest levels of insight and impact requires robust tooling and reproducibility baked into its core"; "...requires code that can handle significant complexity and can evolve" [1/3]

27.07.2025 14:00 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

I whispered the answer but you were too far away to hear. If only there was a way you could hear me from further away

10.07.2025 20:20 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

A hexagonal honeycomb made by β€˜C’s rather than bees?

01.07.2025 19:09 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Two beer glasses of Prosecco

Two beer glasses of Prosecco

The impromptu celebration lacked champagne flutes for the prosecco, so we had to make do with beer glasses πŸ˜‚

29.06.2025 21:09 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I'm delighted to share the news that I've been promoted to (full) Professor. Feeling very thankful for all those who have mentored and supported me over the years, the smart and enthusiastic team I get to work with on cool science, and the colleagues who make Glasgow a great place to work.

29.06.2025 21:09 β€” πŸ‘ 6    πŸ” 1    πŸ’¬ 1    πŸ“Œ 1

Some wise words on the use of GenAI in scientific activity. "...that is a tacit admission that the work is not worth being done by the scientist. [...] we’ve yielded the opportunity to think about science, discuss our practice, expand our understanding, spark new ideas and develop as researchers."

26.06.2025 08:20 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I’ve used their CCDs for years and have been quite a fan of them. Engineers are very responsive about driver stuff. After CCDs discontinued I am trialling a xiC and am impressed so far- but will need to check out Doug’s comments…

17.06.2025 19:23 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

FΓ©licitations! Γ‡a a l'air important et interessant.

14.06.2025 18:07 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Word cloud of keywords written by attendees, including "imaging forces", "technologies", "forces and mechanobiology", "tissue tension" etc

Word cloud of keywords written by attendees, including "imaging forces", "technologies", "forces and mechanobiology", "tissue tension" etc

I'm excited to be co-organising a workshop on Imaging Forces & Mechanobiology in Living Tissues @ Imperial College London, Wed 2 July (with @noelresearchlab.bsky.social & @jvermot.bsky.social). Register here forms.cloud.microsoft/e/hakfMEbgRB by 13 Jun (limited spaces; will confirm acceptance asap)

06.06.2025 16:54 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 1
University of Glasgow illuminated in rainbow pride flag colours

University of Glasgow illuminated in rainbow pride flag colours

Queer teachers are living proof of queer futures - created by Adrian

Queer teachers are living proof of queer futures - created by Adrian

A group of people standing outside of the univeristy of glasgow main building

A group of people standing outside of the univeristy of glasgow main building

Lauren stands in front of a presentation screen, it's titled: Category is... staff and student experiences of rainbow office hours.

Lauren stands in front of a presentation screen, it's titled: Category is... staff and student experiences of rainbow office hours.

As we mark #PrideMonth, we take this moment to celebrate LGBTQ+ identities and also reflect on the ongoing work to make our universities places where every member can thrive.

Thank you to colleagues for co-authoring this powerful piece on Rainbow Office Hours ➑️ gla.ac/3Zio6uv

#OneTeamUofG πŸ³οΈβ€πŸŒˆ πŸ³οΈβ€βš§οΈ

06.06.2025 11:32 β€” πŸ‘ 13    πŸ” 3    πŸ’¬ 1    πŸ“Œ 1
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#Science Bluesky, do your thing:
We're organising the International Symposium on Mechanobiology (ISMB) 2026 in #Glasgow & we're looking for research groups in Latin America & Africa who are doing great work in #Mechanobiology or adjacent areas.
Can you indicate some names to me?

30.05.2025 20:23 β€” πŸ‘ 35    πŸ” 26    πŸ’¬ 4    πŸ“Œ 2

1. Over the past four months I've talked with many foundation directors about science philanthropy during Trump 2.0.

Two things come to the fore every time.

i) The most important they can do is maintain the pipeline of talent

ii) With the federal govt pulling out, ROI is higher now than ever.

16.05.2025 18:27 β€” πŸ‘ 319    πŸ” 102    πŸ’¬ 4    πŸ“Œ 4

For this scheme, you can choose the topic of study in conjunction with your chosen PhD supervisor. If you are considering PhD study, and are interested and eligible for this opportunity, I would be happy to help link you up with potential supervisors based on the research area you are excited about.

29.04.2025 16:30 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
University of Glasgow - Scholarships & funding - James McCune Smith PhD ScholarshipssearchSearch iconClose menu iconMenu icon bar 1Menu icon bar 2Menu icon bar 3

Fully-funded and well-supported PhD opportunity for Black UK-domiciled students here at Glasgow University: www.gla.ac.uk/scholarships.... The main call for applications closed in January, but evidently 2 more places have become available - a potential open goal for a suitable applicant! [1/2]

29.04.2025 16:30 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
Preview
You’re only human: a six-step strategy to surviving your PhD Graduate students are not machines. Behaving like one during your programme will leave you frustrated and unfulfilled, says Gauthier Weissbart.

Some wise advice here about how to approach the challenges of PhD study, from the human perspective: www.nature.com/articles/d41...

24.04.2025 12:08 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

It’s definitely in Edinburgh somewhere

07.04.2025 19:35 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Wonderful meeting on Friday organised by @glasgowimaging.bsky.social , with inspiring and impressive keynote talk by @alicepyne.bsky.social and a brilliant array of ECR speakers doing cool science driven by imaging. Had some great conversations; looking forward to next year already πŸ˜€

06.04.2025 06:13 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Neil Chue Hong (www.linkedin.com/in/neilchueh...) discusses SSI's Β£4.8M Research Software Maintenance Fund (www.software.ac.uk/news/ukri-aw...), supporting research software maintenance, and its role in software sustainability.

Listen at πŸŽ™οΈ podcast.sustainoss.org/264

21.03.2025 14:00 β€” πŸ‘ 5    πŸ” 7    πŸ’¬ 0    πŸ“Œ 1

Nice setup. Just wondering if there was a particular reason you used the BE05-532 high power expander, rather than the cheaper
GBE05-A?

19.03.2025 11:28 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

This is a valuable course for UK researchers writing research code and wanting to put their practices on a more robust and open footing, and learn more about best practices in the field.

17.03.2025 14:36 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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πŸ§‘β€πŸ« The SSI is delivering a course on β€œSoftware practices for open and reproducible research” from Tuesday 1-4 April. Find out more about it at www.software.ac.uk/news/worksho...

13.03.2025 10:26 β€” πŸ‘ 3    πŸ” 7    πŸ’¬ 0    πŸ“Œ 2

Of course, go right ahead!

13.03.2025 07:28 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

One more week left to apply! Closing date 19th March

12.03.2025 18:27 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Preview
ZEISS LSM Lightfield 4D | High-speed Light-Field Microscopy Experience instant volumetric high-speed imaging of living organisms. Extend your LSM with Lightfield 4D for fast volume acquisition of dynamic processes.

Looks like Zeiss just released a Fourier light field (doi.org/10.1364/OE.2...) product: www.zeiss.com/microscopy/e...

I'll be very interested to see how people get on with it.

05.03.2025 20:36 β€” πŸ‘ 14    πŸ” 2    πŸ’¬ 2    πŸ“Œ 0

As an add-on to a confocal microscope I think there are some very cool possibilities for using the two modalities in tandem, if the two can be integrated closely enough, scriptable etc. [4/4]

06.03.2025 12:52 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Cons: I struggle to see it being the right tool for detailed 3D structural imaging or for quantitiative measurements in all but the sparsest samples, without some much stronger validation of fidelity-of-reconstruction. Resolution is (of course) somewhat limited [3/4]

06.03.2025 12:52 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Pros: impressive engineering of a technology that I didn't think could be easily engineered into a consumer product. Good (albeit somewhat opaque) handling of background signal and clutter. No AI in sight. [2/4]

06.03.2025 12:52 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

It seems like a good instrument for getting a 2.5D sense of your sample structure, with a lot of potential for rapid large-scale overview, detection of events where you've got a pretty good idea what you're looking for (but not when/where), etc. [1/4]

06.03.2025 12:52 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

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