Our Metabuli taxonomic classifier is now available as an app compatible with Windows, Linux, and macOS. It features an interactive visualization developed by @sunjaelee.bsky.social, along with improvements to Metabuli by @jbeom.bsky.social.
π academic.oup.com/bioinformati...
16.10.2025 13:01 β π 24 π 8 π¬ 0 π 0
Easy and interactive taxonomic profiling with Metabuli App.
It integrates database curation, read QC, taxonomic profiling, and visualization right on your desktop.
No command line, server, or internet required.
Now published in Bioinformatics! π§΅1/5
doi.org/10.1093/bioi...
github.com/steineggerla...
16.10.2025 07:29 β π 23 π 11 π¬ 1 π 1
Easy and interactive taxonomic profiling with Metabuli App academic.oup.com/bioinformati... π§¬π₯οΈπ§ͺ github.com/steineggerla...
14.10.2025 17:55 β π 15 π 5 π¬ 0 π 0
Today at 5pm, @eunbelivable.bsky.social will present her work on the Big Fantastic Viral Database (BFVD) at #ISMB2025 in BOSC. She also has a poster B-123 (tomorrow, 22nd), so please drop by to have ta chat and grab some stickers!
π academic.oup.com/nar/article/...
21.07.2025 09:29 β π 35 π 10 π¬ 1 π 1
Visit our posters at #RECOMB2025 for:
Structural: MSAs, Virus DB, Core Genes, Motif Discovery, Multimer Clustering & Search, pLM Foldseek, Environmental analysis
Metagenomics: Classification & Metabuli App
GPU-based & RNA search, Proteome clustering, Novel Ribozyme discovery
& get Marv stickers!
25.04.2025 07:45 β π 64 π 19 π¬ 2 π 4
Metabuli App preprint is out!
π»Taxonomic classification & interactive visualizationβright on your laptop
π οΈCreate new databases or update existing ones with new sequences. π§΅1/5
github.com/steineggerla...
www.biorxiv.org/content/10.1101/2025.03.10.642298v1
13.03.2025 08:50 β π 20 π 16 π¬ 1 π 1
I want to celebrate the #WomenInScience in my lab by spotlighting recent work by @eunbelivable.bsky.social @im-gyuri.bsky.social @sewonlee.bsky.social Eli Levy Karin
& upcoming by @sooyoung-cha.bsky.social @lunajang.bsky.social @sunjaelee.bsky.social @yewonhan.bsky.social. Proud to work with you.
08.03.2025 15:28 β π 39 π 5 π¬ 1 π 0
The Foldseek webserver for fast protein structure searches now features a Sankey tree taxonomy visualization and filter, allowing to subset hits by clades. Developed by my talented student @sunjaelee.bsky.social. Try it out!
π search.foldseek.com
17.01.2025 12:33 β π 82 π 26 π¬ 4 π 0
Thank you so much for the kind words!! Iβm so happy to hear that you like the Sankey diagrams! I am planning on making this into a reusable component so that it can be easily integrated into your own projects. I will share updates once it is ready! Thanks so much! π
17.01.2025 17:33 β π 2 π 0 π¬ 0 π 0
Easy taxonomic profiling with the Metabuli App! Explore your samples with publication-ready Sankey and Krona plots. We accelerated Metabuli further, classifying 2x22M reads vs. GTDB in just 43 min on a MacBook Pro M2. π§΅1/4
πhttps://github.com/steineggerlab/Metabuli-App
30.09.2024 01:20 β π 12 π 2 π¬ 1 π 0
Discover the Languages of Biology
Build computational models to (help) solve biology? Join us! https://www.deboramarkslab.com
DM or mail me!
biology + computers + a leavening of snark | π¨βπ¨βπ§βπ§π³οΈβπ| nanomedicine | cancer genomics 𧬠| ML | biomaterials | #compchem #matsky #chemsky #ai4science #materialsinformatics #md | startups | @Cal π» @Stanford @UniversityOfOxford @OxfordNano (swimsf on the Bad Place)
Senior editor @science.org. Molecular biology, #DNA, #RNA, #gene regulation, #epigenetics, nuclear biology, #chromatin biology, 3D #genome, #synbio, #CRISPR and gene editing, other bacterial immune systems, and #AI in all these
Developing fast and easy methods for #phylogenetics and #bioinformatics | PhD in Bioinformatics | Postdoc @ Comparative Genomics Lab, UNIL/SIBπ¨π| Formerly @ Steinegger Lab, SNUπ°π· | he/him
AI/ML for proteins, small molecules, and everything in between. Scientist @AtomwiseInc. (she/her) π Previously: UCSF, Columbia, DE Shaw Research, MIT.
Principal Researcher in BioML at Microsoft Research. He/him/δ». πΉπΌ yangkky.github.io
Gene regulation in health and disease | Professor/Vice-Chair @UCSF Dept. of Biochemistry and Biophysic | via Stanford, UCSF and MIT | https://madhanilab.ucsf.edu
Structural Systems Biology at NCI/NIH. Views are my own. #TeamMassSpec
𧬠Structural Bioinformatics | π AI/ML for Drug Discovery | Geometric DL
π¬ @iocbprague.bsky.social, prev. PhD @cusbg.bsky.social @mff.unikarlova.cuni.cz
Integrated Ph.D. program at Steinegger Lab
@martinsteinegger.bsky.social
Majored in Bioscience at @Seoul National University
Scientist, Assistant Professor at MIT biology, #FirstGen
Bioinformatics PhD Student
Steinegger lab, SNU, Korea
π§¬Bioinformatician in Steinegger lab, SNU, Korea π€Interested in protein structure and software development π€ΊLive double life as a fencer
Developing bioinformatics software in Steinegger lab. at Seoul National Univ.
Developing data intensive computational methods β’ PI @ Seoul National University π°π· β’ #FirstGen β’ he/him β’ HauptschΓΌler
Open source methods for #metagenomics with @martinsteinegger.bsky.social Seoul National University π°π· | former SΓΆding Lab MPI-NAT π©πͺ | http://mstdn.science/@milotmirdita
