@lcolladotor.bsky.social
#RStats @Bioconductor.bsky.social/🧠 genomics @lieberinstitute.bsky.social + Asst. Prof. @jhubiostat.bsky.social/@lcgunam @jtleek.bsky.social @aejaffe.bsky.social alumni/ @libdrstats.bsky.social @CDSBMexico.bsky.social http://lcolladotor.github.io
Here’s the original 2005 solo author paper by Philip E. Bourne
journals.plos.org/ploscompbiol...
RIP Philip E. Bourne whom among many things made the “ten simple rules…” PLOS Computational Biology series so successful! @plos.org
journals.plos.org/ploscompbiol...
Thanks to all my @lieberinstitute.bsky.social and external colleagues who helped me with my first 🇺🇸 National Institutes of Health (NIH) R01 grant resubmission ^^ and those who wrote support letters for it
Hopefully it’ll do well on this second round! Fingers crossed 🤞🏽
#ESI
Folks from underrepresented groups in data science and open source: we'd love to have you join!
The future of #DataScience is at #positconf 2026. Check out our keynote lineup:
Wes McKinney: Future of high-performance computing
Christine Zhang: Data storytelling at NY Times
Emily Riederer: Scaling open-source at Capital One
Sara Altman & Simon Couch: AI-driven workflows
Register: pos.it/conf
¡Gracias Sean! Ya lo encontraron sano y a salvo 🙌🏽
¡Gracias Ana! Si, al final fue un buen susto 😨. Pero solo eso. Uff 😥
fue físicamente a esa casa a buscarlo.
En fin, ya pasó el susto y al final de la historia, lo importante es que está bien Julio.
¡Gracias por ayudarme a compartir la info!
Leo
¡Hola!
Ya encontraron a mi primo Julio D. Velázquez Torres. Está sano y a salvo. Si lo asaltaron y le quitaron todas sus pertenencias y dinero. Así que se estaba quedando en casa de un amigo, que tampoco tiene celular. Por eso se quedó incomunicado hasta que su hermana
Apply to be an Opportunity Scholar at posit::conf(2026) in Houston!
We’re offering 40 full-support scholarships for underrepresented groups in data science. Includes: 🎟️ Conference+Workshop pass 🏨 Hotel stay ✈️ Travel reimbursement
Apply by March 13: posit.co/blog/apply-t...
#positconf2026 #rstats
Excellent first post Marina!
Welcome to BlueSky and #RStats + #Bioconductor
#RStatsES 🙌🏽 🇲🇽
Discovered miRBaseConverter (Bioconductor) this week and thought it was cool 🙌
It translates miRNA names across miRBase versions and retrieves sequence info programmatically, making dataset integration smoother.
Already saving me future headaches.
Thanks to Taosheng Xu 👏
We spend >1 hr per week officially learning about new tools 🧰 & resources 📜. This keeps us adaptive!
To scale up, we clone ourselves thanks to public YouTube videos which allow us to build customized training lists.
-- o --
See you in September 2026 🤞🏽!
posit.co/blog/posit-c...
learning, and creating open access content I’ve been able to build an adaptive, efficient, and resilient team.
The documentation website provides information about config files, accessing common software on an HPC, templates, and “blog”-level docs that can be updated but are not tested daily.
Abstract (max 750 characters):
-- o --
I’d like to share about how I’ve organized the @lieberinstitute.bsky.social “Data Science team 1” (Translational Neuroscience Division) since I took over its leadership in September 2020. By having a team documentation website, an emphasis on continuous
Talk submission video for Posit Conf 2026 #RStats
«Organizing your data science team to be efficient, adaptive to new developments, and resilient to turnover rate»
URLs:
1. lcolladotor.github.io/bioc_team_ds/
2. research.libd.org/rstatsclub/
3. github.com/LieberInstit...
#OpenSource #Bioconductor
🚨 Último día 🚨
Hoy 20/2 cierra la convocatoria del Programa de Campeon(a|e)s
12 meses de mentoría, formación y comunidad en software científico y ciencia abierta, con foco en América Latina y en español.
⏰ Aplicá hoy 👉 champions-program.ropensci.org
Sumate a la próxima cohorte 💙
#RStats
New postdoctoral opportunity @lieberinstitute.bsky.social working w/ @tsawada1.bsky.social and our Molecular Neurogenetics team using human induced pluripotent stem cells to investigate molecular, cellular and neuroendocrine mechanisms by which impaired placental function impacts brain development
Hehehe :) I’m glad that you liked it ^^. Though I’m afraid that 300 🧩 pieces won’t last long hehe.
Though you can remake it several times. I’m curious to see 👀 how fast you’ll be able to put it together by memory hehe 🙃
FIRST post here on Bluesky - we’re excited to share that our large spatial transcriptomics study of the human dlPFC in schizophrenia is now available on bioRxiv📄: www.biorxiv.org/content/10.6... (1/9)
Happy new year!! 🧧🎉🎇🌑🐎
If you study microbiome Time series (gut, soil or mangroves -> like me) you want to know this...
#miaTime (new on #Bioconductor3.22) gives you:
🟢 Divergence
🟢 Short-term change
🟢 Bimodality
Thanks to the devs: @antagomir.bsky.social @tuomasborman.bsky.social
#RStats #Microbiome #Bioconductor
Today I had the opportunity to teach as a guest instructor in a bioinformatics course at #LCG-UNAM 👨🏻💻.
We built academic websites with #postcards (thanks @seankross.com!), inspired by @hadley.nz and @jtleek.bsky.social.
Thanks to Dr. @lcolladotor.bsky.social for the invitation! 🚀
#RStats
Looking forward to contributing to a course session this week at #LCG-UNAM 👨🏻💻
Grateful for the opportunity to learn through teaching! 😊
The ASA Pride Scholarship was established to raise awareness and support the success of LGBTQ+ statisticians and data scientists, as well as allies. Nominate a deserving person by March 1. stattrak.amstat.org/...
Issue 31 of RDM Weekly is out! 📬
➡️ OS resources in Comm Sciences @csdisseminate.bsky.social
➡️ RDA 25th Plenary Meeting Programme @researchdataall.bsky.social
➡️ Ask for R Help by Creating a Small Reproducible Example @libdrstats.bsky.social
and more!
rdmweekly.substack.com/p/rdm-weekly...
lcolladotor.github.io/rnaseq_LCG-U... is looking ready for next week!
We'll have the most guest presenters ever this year with @meli-mq99.bsky.social @gabrielramirezv.bsky.social @mariagtac.bsky.social & @daiannaglez.bsky.social 🙌🏽
See you soon at LCG-UNAM! 🇲🇽
#RStats @bioconductor.bsky.social
In a recent journal club, I covered the SOFA paper by @wkhuber.bsky.social and colleagues. It's especially cool how you can guide the factorization approach with known covariates.
Check out their preprint (doi.org/10.1101/2024...) and our discussion (youtu.be/WKs-g4lXzZs)!
A colleague Geo @geopertea.bsky.social found out a cool trick to get Positron working with full support at our computing cluster JHPCE (remote file explorer, Positron assistant seeing the remote R session). Game changer for my work at LIBD! Check out his demo video (youtu.be/CnmaJG8VPp8) #positron
you don't need to copy/paste from that preview! the rendered reprex, in a friendly md form, is already on your clipboard 😆
the htmlpreview is for your 👀, but the good stuff is on the clipboard waiting to be pasted in the relevant venue (default is github, but slack can also be requested)