πŸ‡²πŸ‡½ Leonardo Collado-Torres's Avatar

πŸ‡²πŸ‡½ Leonardo Collado-Torres

@lcolladotor.bsky.social

#RStats @Bioconductor.bsky.social/🧠 genomics @lieberinstitute.bsky.social + Asst. Prof. @jhubiostat.bsky.social/@lcgunam @jtleek.bsky.social @aejaffe.bsky.social alumni/ @libdrstats.bsky.social @CDSBMexico.bsky.social http://lcolladotor.github.io

3,981 Followers  |  2,873 Following  |  386 Posts  |  Joined: 06.09.2023
Posts Following

Posts by πŸ‡²πŸ‡½ Leonardo Collado-Torres (@lcolladotor.bsky.social)

Folks from underrepresented groups in data science and open source: we'd love to have you join!

20.02.2026 22:27 β€” πŸ‘ 5    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
Post image Post image Post image Post image

The future of #DataScience is at #positconf 2026. Check out our keynote lineup:
Wes McKinney: Future of high-performance computing
Christine Zhang: Data storytelling at NY Times
Emily Riederer: Scaling open-source at Capital One
Sara Altman & Simon Couch: AI-driven workflows
Register: pos.it/conf

27.02.2026 16:05 β€” πŸ‘ 16    πŸ” 8    πŸ’¬ 0    πŸ“Œ 2

Β‘Gracias Sean! Ya lo encontraron sano y a salvo πŸ™ŒπŸ½

25.02.2026 22:32 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Β‘Gracias Ana! Si, al final fue un buen susto 😨. Pero solo eso. Uff πŸ˜₯

25.02.2026 22:32 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

fue fΓ­sicamente a esa casa a buscarlo.

En fin, ya pasΓ³ el susto y al final de la historia, lo importante es que estΓ‘ bien Julio.

Β‘Gracias por ayudarme a compartir la info!
Leo

25.02.2026 22:27 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Post image

Β‘Hola!

Ya encontraron a mi primo Julio D. VelΓ‘zquez Torres. EstΓ‘ sano y a salvo. Si lo asaltaron y le quitaron todas sus pertenencias y dinero. AsΓ­ que se estaba quedando en casa de un amigo, que tampoco tiene celular. Por eso se quedΓ³ incomunicado hasta que su hermana

25.02.2026 22:27 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Post image

Apply to be an Opportunity Scholar at posit::conf(2026) in Houston!
We’re offering 40 full-support scholarships for underrepresented groups in data science. Includes: 🎟️ Conference+Workshop pass 🏨 Hotel stay ✈️ Travel reimbursement
Apply by March 13: posit.co/blog/apply-t...
#positconf2026 #rstats

20.02.2026 21:25 β€” πŸ‘ 22    πŸ” 14    πŸ’¬ 0    πŸ“Œ 2

Excellent first post Marina!

Welcome to BlueSky and #RStats + #Bioconductor

#RStatsES πŸ™ŒπŸ½ πŸ‡²πŸ‡½

20.02.2026 21:24 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

Discovered miRBaseConverter (Bioconductor) this week and thought it was cool πŸ™Œ

It translates miRNA names across miRBase versions and retrieves sequence info programmatically, making dataset integration smoother.

Already saving me future headaches.
Thanks to Taosheng Xu πŸ‘

20.02.2026 01:51 β€” πŸ‘ 8    πŸ” 2    πŸ’¬ 0    πŸ“Œ 1
Preview
Posit::conf(2026) Call for Talks - Posit posit::conf(2026) is coming September 14-16 to Houston, TX, and we're looking for talks!

We spend >1 hr per week officially learning about new tools 🧰 & resources πŸ“œ. This keeps us adaptive!

To scale up, we clone ourselves thanks to public YouTube videos which allow us to build customized training lists.

-- o --

See you in September 2026 🀞🏽!

posit.co/blog/posit-c...

20.02.2026 21:18 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

learning, and creating open access content I’ve been able to build an adaptive, efficient, and resilient team.

The documentation website provides information about config files, accessing common software on an HPC, templates, and β€œblog”-level docs that can be updated but are not tested daily.

20.02.2026 21:18 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Abstract (max 750 characters):

-- o --

I’d like to share about how I’ve organized the @lieberinstitute.bsky.social β€œData Science team 1” (Translational Neuroscience Division) since I took over its leadership in September 2020. By having a team documentation website, an emphasis on continuous

20.02.2026 21:18 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Video thumbnail

Talk submission video for Posit Conf 2026 #RStats

Β«Organizing your data science team to be efficient, adaptive to new developments, and resilient to turnover rateΒ»

URLs:
1. lcolladotor.github.io/bioc_team_ds/
2. research.libd.org/rstatsclub/
3. github.com/LieberInstit...

#OpenSource #Bioconductor

20.02.2026 21:18 β€” πŸ‘ 10    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
rOpenSci Nuestro programa busca identificar, reconocer y premiar a las personas lΓ­deres en una comunidad de ciencia abierta, ingenierΓ­a de software de investigaciΓ³n y la comunidad de programaciΓ³n R.

🚨 Último día 🚨
Hoy 20/2 cierra la convocatoria del Programa de Campeon(a|e)s
12 meses de mentorΓ­a, formaciΓ³n y comunidad en software cientΓ­fico y ciencia abierta, con foco en AmΓ©rica Latina y en espaΓ±ol.
⏰ AplicΓ‘ hoy πŸ‘‰ champions-program.ropensci.org
Sumate a la prΓ³xima cohorte πŸ’™
#RStats

20.02.2026 03:46 β€” πŸ‘ 4    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

New postdoctoral opportunity @lieberinstitute.bsky.social working w/ @tsawada1.bsky.social and our Molecular Neurogenetics team using human induced pluripotent stem cells to investigate molecular, cellular and neuroendocrine mechanisms by which impaired placental function impacts brain development

20.02.2026 02:50 β€” πŸ‘ 28    πŸ” 26    πŸ’¬ 1    πŸ“Œ 0

Hehehe :) I’m glad that you liked it ^^. Though I’m afraid that 300 🧩 pieces won’t last long hehe.

Though you can remake it several times. I’m curious to see πŸ‘€ how fast you’ll be able to put it together by memory hehe πŸ™ƒ

19.02.2026 22:14 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

FIRST post here on Bluesky - we’re excited to share that our large spatial transcriptomics study of the human dlPFC in schizophrenia is now available on bioRxivπŸ“„: www.biorxiv.org/content/10.6... (1/9)

18.02.2026 02:56 β€” πŸ‘ 42    πŸ” 15    πŸ’¬ 3    πŸ“Œ 4
Post image

Happy new year!! πŸ§§πŸŽ‰πŸŽ‡πŸŒ‘πŸŽ

16.02.2026 18:04 β€” πŸ‘ 5    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

If you study microbiome Time series (gut, soil or mangroves -> like me) you want to know this...

#miaTime (new on #Bioconductor3.22) gives you:

🟒 Divergence
🟒 Short-term change
🟒 Bimodality

Thanks to the devs: @antagomir.bsky.social @tuomasborman.bsky.social

#RStats #Microbiome #Bioconductor

12.02.2026 00:14 β€” πŸ‘ 13    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
Post image Post image

Today I had the opportunity to teach as a guest instructor in a bioinformatics course at #LCG-UNAM πŸ‘¨πŸ»β€πŸ’».
We built academic websites with #postcards (thanks @seankross.com!), inspired by @hadley.nz and @jtleek.bsky.social.
Thanks to Dr. @lcolladotor.bsky.social for the invitation! πŸš€

#RStats

13.02.2026 03:22 β€” πŸ‘ 10    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

Looking forward to contributing to a course session this week at #LCG-UNAM πŸ‘¨πŸ»β€πŸ’»
Grateful for the opportunity to learn through teaching! 😊

10.02.2026 04:12 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
An illustration of a megaphone with Pride flag colors streaming out of it.

An illustration of a megaphone with Pride flag colors streaming out of it.

The ASA Pride Scholarship wasΒ establishedΒ to raise awareness and support the success of LGBTQ+ statisticians and data scientists, as well as allies. Nominate a deserving person by March 1. stattrak.amstat.org/...

05.02.2026 19:00 β€” πŸ‘ 5    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
Preview
RDM Weekly - Issue 031 A weekly roundup of Research Data Management resources.

Issue 31 of RDM Weekly is out! πŸ“¬

➑️ OS resources in Comm Sciences @csdisseminate.bsky.social
➑️ RDA 25th Plenary Meeting Programme @researchdataall.bsky.social
➑️ Ask for R Help by Creating a Small Reproducible Example @libdrstats.bsky.social
and more!

rdmweekly.substack.com/p/rdm-weekly...

03.02.2026 14:05 β€” πŸ‘ 13    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
@lieberinstitute.bsky.social @jhubiostat.bsky.social

@lieberinstitute.bsky.social @jhubiostat.bsky.social

lcolladotor.github.io/rnaseq_LCG-U... is looking ready for next week!

We'll have the most guest presenters ever this year with @meli-mq99.bsky.social @gabrielramirezv.bsky.social @mariagtac.bsky.social & @daiannaglez.bsky.social πŸ™ŒπŸ½

See you soon at LCG-UNAM! πŸ‡²πŸ‡½

#RStats @bioconductor.bsky.social

03.02.2026 05:21 β€” πŸ‘ 8    πŸ” 3    πŸ’¬ 0    πŸ“Œ 1

In a recent journal club, I covered the SOFA paper by @wkhuber.bsky.social and colleagues. It's especially cool how you can guide the factorization approach with known covariates.

Check out their preprint (doi.org/10.1101/2024...) and our discussion (youtu.be/WKs-g4lXzZs)!

08.01.2026 18:00 β€” πŸ‘ 7    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

A colleague Geo @geopertea.bsky.social found out a cool trick to get Positron working with full support at our computing cluster JHPCE (remote file explorer, Positron assistant seeing the remote R session). Game changer for my work at LIBD! Check out his demo video (youtu.be/CnmaJG8VPp8) #positron

27.01.2026 19:53 β€” πŸ‘ 7    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

you don't need to copy/paste from that preview! the rendered reprex, in a friendly md form, is already on your clipboard πŸ˜†

the htmlpreview is for your πŸ‘€, but the good stuff is on the clipboard waiting to be pasted in the relevant venue (default is github, but slack can also be requested)

27.01.2026 20:08 β€” πŸ‘ 5    πŸ” 1    πŸ’¬ 1    πŸ“Œ 1

Thanks Jenny!

The me from 2020 didn't know that πŸ˜…. But it's great that you clarified it! I've just been playing a bit with Adobe Express clip maker to make these clips. Though first I had to remove filler words and pauses :P

In any case, I love #reprex and want to spread the love around =)

27.01.2026 20:19 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

That's exactly why you need to include the library() statements showing which packages you're actually using πŸ’‘. I emphasized that all of this - the whole #reprex approach - is simply about making it easier for other people to help you faster⚑🀝. These are the main advantages of the reprex package! βœ¨πŸ‘πŸ½

27.01.2026 20:16 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Video thumbnail

I explained why including context is crucial πŸ“š! I pointed out that someone could just paste code like "GRanges from 1 to 1000 plus..." but then I would be confused πŸ˜• asking "where does this function come from? What package is this from?" πŸ“¦β“

@jennybryan.bsky.social #RStats #reprex

27.01.2026 20:16 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0