📜 New preprint! We developed PoGö, an algorithm to optimize the essential dynamics of GöMartini proteins based on all-atom simulations: www.biorxiv.org/content/10.1...
27.10.2025 07:54 — 👍 33 🔁 12 💬 2 📌 3
Just because this came up a few times recently
If you need to compare two or more ensembles (like RMSD for structures) we developed algorithms and code (ENCORE) to do just that
Similarity Measures for Protein Ensembles
journals.plos.org/plosone/arti...
ENCORE
journals.plos.org/ploscompbiol...
27.10.2025 08:00 — 👍 50 🔁 7 💬 0 📌 1
Try out the code for yourself:
💻 github.com/wilsonjcarte...
27.10.2025 07:56 — 👍 3 🔁 1 💬 0 📌 0
We (@sobuelow.bsky.social) developed AF-CALVADOS to integrate AlphaFold and CALVADOS to simulate flexible multidomain proteins at scale
See preprint for:
— Ensembles of >12000 full-length human proteins
— Analysis of IDRs in >1500 TFs
📜 doi.org/10.1101/2025...
💾 github.com/KULL-Centre/...
20.10.2025 11:26 — 👍 89 🔁 37 💬 0 📌 0
Microtubule dynamics are defined by conformations and stability of clustered protofilaments | PNAS
Microtubules are dynamic cytoskeletal polymers that add and lose tubulin dimers at
their ends. Microtubule growth, shortening, and transitions betw...
Have a great D2@ #EBSA2025 in Rome🫠! Here are the posters of today's session: 📌Maksim @maksimkalutskii.bsky.social is presenting (P-2.195) his project addressing #Microtubule Dynamics Are Defined by Conformations and Stability of Clustered #Protofilaments 📜🔗 www.pnas.org/doi/10.1073/...
02.07.2025 07:32 — 👍 5 🔁 3 💬 1 📌 0
📌Carter @carterjwilson.bsky.social is presenting (P-2.44) "A Tale of Two #Aquaporins: Structural Mechanisms of Gating and Inhibition in Aqp3 and Aqp7" and + 📌Florian will explain (P-2.196) "How Loop #Dynamics Control Activity and Selectivity of a Short Chain #Reductase" Happy discussions! 👥
02.07.2025 07:32 — 👍 2 🔁 2 💬 1 📌 0
Conducting research in the natural and medical sciences to obtain fundamental new insights. Posts by the communication team.
PhD student in MPI for multidisciplinary sciences, Göttingen
Assistant Professor at Dartmouth College
Computational Biophysics / Disordered Proteins / Molecular Recognition
Associate Professor, Computational biophysicist @UofT
http://rauscher-group.physics.utoronto.ca
Professor of Computational Life Science at Goethe University Frankfurt. Computer simulations of biomolecular systems, statistical modeling, and machine learning.
Phd Student in the field of Cell Biology and Biophysics. Exploring cytoskeletal dynamics in oocyte meiosis.
@MPINAT @UniGöttingen
Computational structural biologist @Fox Chase Cancer Center. Gay, out & proud since 1986. I support transgender & nonbinary people. Living with CLL/SLL. Video about my LGBTQ+ life in science: https://tinyurl.com/45srzjdw. Views my own, not my employer's.
Computational Biophysicist, Amateur Photographer, History+Language Nerd.
All views my own.
Website: https://martinvoegele.github.io/
Transforming drug discovery and materials research.
BioMemPhys – Theoretical & Computational Membrane Biophysics, Professor at Friedrich-Alexander University Erlangen-Nürnberg, Germany – loving biomembranes - immunology - immune domains - plasma membranes - molecular dynamics
Theoretical and computational physicist working on ribosomes and antibiotics - atomistic simulations, statistical physics and ML. Project leader at the MPI for Multidisciplinary Sciences
https://t.co/1ecLGaOjXB 🚴
Group Leader at the Heidelberg University Biochemistry Center (BZH)
A computational physicist lost into a biochemistry Lab.
Find me on Mastodon:
@fabiolol@scientificnetwork.de
https://fabiololicato.com
Lecturer in Computational Pharmaceutical Chemistry at Queen Mary University of London | Visiting Scientist at the Max Planck Institute for Multidisciplinary Sciences | Computational Electrophysiology & Ion Channels
Poland->Denmark->USA->Germany->UK..?
Computational biophysicist, prof at KTH, Stockholm. Loves membrane proteins and mathematical models. Mom of twin toddlers. 🇫🇷🇸🇪
Prof of Computational Microbiology. Oxford Biochemistry & St Anne’s College. Bacterial Cell Envelopes. LFC fan 🌈
Professor at UC San Diego. Computational biophysics, biology, chemistry. Multiscale modeler. Viruses. Cancer. Co-Director of the Airborne Institute.
Post-Doc in the Department of Theoretical and Computational Biophysics at Max Planck Institute for Multidisciplinary Sciences | MD simulations of the rib-awe-some 💻🔍🧬
Biophysicist based in Prague, CZE. Interested in ribosomes, conformational disorder, and computation. Volunteer in @czexpats.bsky.social, Editorial Board Member of @commsbio.nature.com. Likes traveling by train, dislikes tomatoes.
https://kolar.vscht.cz
