GitHub - qbic-pipelines/vcftomaf
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Finally got around to release a tiny pipeline together with Susanne Jodoin: github.com/qbic-pipelin...
It takes VEP-annotated VCFs, filters them, and converts them to MAF format. Tested with @nf-co.re /sarek generated VCF files.
13.03.2024 12:24 — 👍 3 🔁 2 💬 0 📌 0
The nf-core hackathon is back! Join us Mon 18th - Wed 20th March 2024 for 3 days of Nextflow and fun!
In 2023 we supported local sites for the first time. With almost 20 volunteers organizing local sites around the world, they were a massive success.
16.01.2024 17:22 — 👍 2 🔁 3 💬 2 📌 0
Release MultiQC version 1.19 · ewels/MultiQC
Highlights
An early Christmas present 🎁 Happy holidays everyone! 🎄
This release is mostly bugfixes and minor additions, whilst we lay the groundwork for some bigger updates coming in the new yea...
MultiQC v1.19 was just released - just in time for the holidays! 🎁 🎄
This release has a bunch of bug-fixes, with 9 different modules receiving tweaks and improvements 🛠️ The MultiQC core code also got a bit of sprucing up and spring cleaning 🧽🫧
Enjoy!
github.com/ewels/MultiQ...
18.12.2023 10:13 — 👍 10 🔁 7 💬 0 📌 0
A new release is out with a few new tools ✨
- 🔀 NGSCheckmate to find sample swaps
- 🧬 Sentieon DNAScope Support
- 📏 CNVKit Genemetrics
- 🔬 BCFTools annotate
Special shout-out to Grant Neilson, Simon Pearce, and Raquel Manzano for their first contributions 😍 and everyone that helped out!
16.11.2023 08:11 — 👍 3 🔁 1 💬 0 📌 0
Not enough people know about bioicons.com
Open source vector graphics. Free alternatives to BioRender.
08.11.2023 15:17 — 👍 223 🔁 135 💬 9 📌 3
Pipeline release! nf-core/airrflow v3.2.0 - nf-core/airrflow version 3.2.0 "Expecto patronum"!
Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/3.2.0
27.10.2023 13:24 — 👍 4 🔁 2 💬 0 📌 0
🎉 Massive shoutout to Seqera Labs for yet another incredible #NextflowSummit! 🙌
🌟 This is truly one of the best hybrid conference experiences. Here’s why:
1/🧵
📺 HQ Dual video: slides + the presenter. Clear visuals are so commonly overlooked with virtual conferences. 👏
22.10.2023 06:50 — 👍 5 🔁 2 💬 2 📌 0
Thank you, @lwpembleton.bsky.social 🙌 ! It's been an exciting ride and I learned so much throughout. Also huge shout out to @maxulysse.bsky.social, the father of sarek!
21.10.2023 16:27 — 👍 3 🔁 0 💬 1 📌 0
👏 Just caught @rikehanssen.bsky.social awesome talk at #NextflowSummit 2023! 🚀 Exploring nf-core/sarek's journey, evolution, and the exciting progress in optimisation 🧬 #Bioinformatics #Nextflow #Sarek
19.10.2023 16:26 — 👍 9 🔁 4 💬 1 📌 0
Just made it here a couple of days ago 🚀 😀
28.09.2023 21:11 — 👍 1 🔁 0 💬 0 📌 0
Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant d...
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
🧬🖥️ The Sarek pipeline from #nfcore deserves a lot more attention.! Input fastq, bams, crams, vcfs - get a full state-of-the-art analysis. Rare to see such well maintained and flexible software in the open domain, please support:
www.biorxiv.org/content/10.1...
25.09.2023 10:40 — 👍 14 🔁 4 💬 2 📌 0
The first community Advanced
Nextflow
training sessions come out today! Starting in a few hours, registrations here: nf-co.re/events/2023...
Huge thanks to the
@nf-co.re team. See you there!
27.09.2023 10:20 — 👍 8 🔁 3 💬 0 📌 0
Assistant Professor for Data Science in Systems Biology at the Technical University of Munich (http://daisybio.de). Mostly posting about bioinformatics and systems / network biology research. Views are my own. he / him.
#Bioinformatics PhD Student currently focusing on #immunopeptidomics pipeline development @nf-co.re 🧬👨💻
Assistant Professor of Genome Informatics. MedUni Innsbruck. Cloud Computing, Machine Learning, AI, Genotype Imputation. Open Source and Open Science. Co-Creator of Michigan Imputation Server and www.askimed.com. Creator of www.nf-test.com.
Single Cell/Spatial. Cancer Immunology. Outdoor activities.
Core developer @scverse.bsky.social.
Working in Clinical Bioinformatics at Boehringer Ingelheim.
Formerly PhD student at Medical University of Innsbruck.
My private account.
github.com/grst
The Open Bioinformatics Foundation (OBF) is a non-profit volunteer-run organization that supports #OpenSource #bioinformatics. Member projects: #BioPerl, #BioJava, #BioRuby and #Biopython. We run an annual meeting, the Bioinformatics Open Source Conference
Das deutschsprachige @RealScientists.
Echte Wissenschaft von echten ForscherInnen, AutorInnen, KommunikatorInnen, KünstlerInnen... Diese Woche: @rinaguran.bsky.social
My primary focus is on immunopeptidomics, complemented by multi-omics data analysis, pipeline development, and application design. I am dedicated to learning and contributing in oncology and immunology topics, driving innovation in these specialized areas
Consultant in #bioinformatics and #cancer applications @insilico.consulting (all things #genomics, #liquidbiopsy, and #workflows) • 🇸🇪 🇩🇪 • 🧬🖥️ • https://brueffer.io
ORCiD: 0000-0002-3826-0989
Professional nerd, lead developer advocate at Seqera, the Nextflow company
PhD Candidate @ UT Dallas in the Functional Genomics Lab working on Nascent RNA identification
@nf-co.re
Bioinformatics Engineer @seqera.io
https://link.edmundmiller.dev/
Here for science and fun. Computational biologist, Researcher, Tinkerer, Ex-Microsoftie, Ex-ASTAR, Ex-UCD. @me_myself_andY on Twitter. Based in Singapore.
Co-founder OMGenomics Labs. Creator of Circa https://circa.omgenomics.com, Ribbon, YouTube.com/omgenomics. Worked on DeepVariant+DeepConsensus at Google.
An American in Germany, an ion channel guy in bioinformatics, a proponent of scientific skepticism in an irrational world.
@devon@genomic.social, @dpryan79 on twitter and github
Clinical Bioinformatics @boehringeringelheim
Bioinformatics | Data Science | Nextflow Pipelines | Genomics | (Personalized) Cancer Immunotherapy
Views are my own.
CSO Nucleus Genomics
Genetics, polygenic risk scores. Previously at impute.me and Genome Center Denmark
Senior Bioinformatics Research Scientist at SJCRH. Cancer, chromatin, and data viz. Shiny addict. Opinions solely my own.
