Lukas Forer's Avatar

Lukas Forer

@lukfor.bsky.social

Assistant Professor of Genome Informatics. MedUni Innsbruck. Cloud Computing, Machine Learning, AI, Genotype Imputation. Open Source and Open Science. Co-Creator of Michigan Imputation Server and www.askimed.com. Creator of www.nf-test.com.

1,626 Followers  |  330 Following  |  67 Posts  |  Joined: 25.11.2023  |  1.8644

Latest posts by lukfor.bsky.social on Bluesky


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Do you remember this Prince of Persia version?

๐ŸŽฎ Prince of Persia
๐Ÿ•น NES (PAL)
๐Ÿ“… 1992
๐Ÿ’ก A simplified but very playable console adaptation

๐Ÿ‘‘ Prince of Persia cartridges every Saturday #PoPSaturday

31.01.2026 09:51 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Over the years, my Game Boy cartridge collection quietly grew to around 100 pieces. Last week, I decided to turn it into a small nostalgia project. One cartridge per day.

25.01.2026 13:04 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Improving the Reliability, Quality and Maintainability of Bioinformatics Pipelines with nf-test Abstract. The workflow management system Nextflow, together with the nf-core community, has established an essential ecosystem in bioinformatics. However,

After a long journey, our nf-test paper is officially out! ๐Ÿš€

doi.org/10.1093/giga...

25.10.2025 08:30 โ€” ๐Ÿ‘ 6    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Cameron Patrick - Some Quarto PDF formatting tips, with particular reference to thesis writing Iโ€™ve just spent most of a day faffing around trying to get Quarto to produce a nice PDF file that I like the look of and which meets my universityโ€™s formatting requirements for a PhD thesis. Maybe my ...

This is how I integrate Quarto and Zotero with minimal suffering (long rambling post, scroll down to the section on bibliography or search for Zotero): cameronpatrick.com/post/2023/07...

03.10.2025 23:39 โ€” ๐Ÿ‘ 9    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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Another Bactopia update!

I think the plugin is completed now! I've also started the transition from pytest to nf-test (from @lukfor.bsky.social and @sebschoenherr.bsky.social). So far nf-test has been great to work with! Haha probably should have made the transition a long time ago!

26.08.2025 19:44 โ€” ๐Ÿ‘ 4    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Sรผdtirol-Raten

:)

๐ŸŒ Sรผdtirol-Raten Nr. 358471
Versuch 1: ๐Ÿ“
-
jrkager.github.io?game=358471

31.07.2025 14:52 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Sรผdtirol-Raten

Sehr cool ๐Ÿ’ช

๐ŸŒ Sรผdtirol-Raten vom 29.7.2025
Versuch 1: 16 km
Versuch 2: 6 km
Versuch 3: ๐Ÿ“
-
jrkager.github.io

29.07.2025 05:23 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Ja. Ich verstehe was du meinst. Bei der Tageschallenge macht es so definitiv mehr SpaรŸ. Eventuell, dass man es beim zufallsmodus optional einstellen kann? Jedenfalls hatte ich gestern viel SpaรŸ damit, danke โœŒ๏ธ

28.07.2025 07:50 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Macht SpaรŸ ๐Ÿ‘ wรคre es event. sinnvoller, die beiden Hinweisorte in unterschiedliche Richtungen/Quadranten zu legen? Beim heutigen Rรคtsel zeigen beide in die gleiche Himmelsrichtung. der zweite liefert imho kaum zusรคtzliche Infos. Ein Ort in einer anderen Richtung wรคre vielleicht hilfreicher.

28.07.2025 07:40 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Cool! 4 Versuche ๐Ÿคท๐Ÿปโ€โ™‚๏ธ

27.07.2025 19:28 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Here you go! #ciddle #sรผdtirol
jrkager.github.io

27.07.2025 18:57 โ€” ๐Ÿ‘ 9    ๐Ÿ” 3    ๐Ÿ’ฌ 6    ๐Ÿ“Œ 2

Jetzt funktioniert es bei mir wieder

14.07.2025 17:33 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Haplomics: A Snakemake pipeline for haplotype-based association analysis in multi-omics studies Summary Genome-wide association studies (GWAS) generated thousands of loci associated with complex traits and diseases. However, to characterize of the pleiotropic, molecular and population genetic bo...

As a post-GWAS analysis, ever thought about automatic haplotype testing @ each locus + test vs any number of traits?
๐Ÿ‘ Amazing @dariushghasemi.bsky.social just released #Haplomics, a #Snakemake pipeline walking u all the way down to summary stats+clustering
www.medrxiv.org/content/10.1...
#statgen

13.06.2025 07:11 โ€” ๐Ÿ‘ 6    ๐Ÿ” 5    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Really cool that the latest VSCode extension for Nextflow shows nf-test test coverage! ๐Ÿš€

17.04.2025 21:06 โ€” ๐Ÿ‘ 2    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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๐‡๐ฎ๐ฆ๐š๐ง๐ ๐ž๐ง๐จ๐ฆ ๐€๐ฎ๐ฌ๐ญ๐ซ๐ข๐š ist jetzt auf Bluesky!

Das รถsterreichische Humangenomprojekt ist eine Initiative fรผr ๐๐ข๐ž ๐ˆ๐ง๐ญ๐ž๐ ๐ซ๐š๐ญ๐ข๐จ๐ง ๐ ๐ž๐ง๐ž๐ญ๐ข๐ฌ๐œ๐ก๐ž๐ซ ๐ฎ๐ง๐ ๐ ๐ž๐ง๐จ๐ฆ๐ข๐ฌ๐œ๐ก๐ž๐ซ ๐ƒ๐š๐ญ๐ž๐ง ๐ข๐ง ๐Œ๐ž๐๐ข๐ณ๐ข๐ง ๐ฎ๐ง๐ ๐–๐ข๐ฌ๐ฌ๐ž๐ง๐ฌ๐œ๐ก๐š๐Ÿ๐ญ in ganz ร–sterreich.

Infos โžก๏ธ www.humangenom.at

#Genetik #Genetics #Health #Genomics #GenomeOfEurope

13.03.2025 11:05 โ€” ๐Ÿ‘ 2    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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What a fantastic talk given by Prof. Michael Moor. Thanks to the Faculty of AI and Scientific Computing in Medicine for organizing such an important event. @i-med.ac.at @sebschoenherr.bsky.social @lukfor.bsky.social #MedSky

06.03.2025 13:51 โ€” ๐Ÿ‘ 5    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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How AI generated code compounds technical debt GitClearโ€™s latest report exposes rising code duplication and declining quality as AI coding tools gain in popularity.

โ€œInfinite code = infinite maintenanceโ€ leaddev.com/software-qua...

23.02.2025 11:43 โ€” ๐Ÿ‘ 10    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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๐ŸŽ™๏ธ #Atherotalk Episode 7 is live, donโ€™t miss it! I had the chance to interview my mentor, Prof. Kronenberg. @i-med.ac.at @aspcardio.bsky.social @katioorni.bsky.social
#MedSky #CardioSky #Lpa #FH #Podcast
๐ŸŽงSpotify: open.spotify.com/episode/26Me...

18.02.2025 23:54 โ€” ๐Ÿ‘ 10    ๐Ÿ” 6    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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After the millennium, I started with Delphi and made a SameGame cloneโ€”then became obsessed with card games! ๐ŸŽด I shared my games in forums and was super happy that people actually played them.

15.02.2025 09:58 โ€” ๐Ÿ‘ 5    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Just found my first real game on some old floppy discs from around 1999: a Mastermind clone written in QBasic.

I remember being super happy and proud because it was the first project I actually finished instead of stopping halfway to start another idea. ๐Ÿ‘จ๐Ÿปโ€๐Ÿ’ป

15.02.2025 09:46 โ€” ๐Ÿ‘ 7    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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GitHub - Boehringer-Ingelheim/dso: Data Science Operations (dso) command line tool Data Science Operations (dso) command line tool. Contribute to Boehringer-Ingelheim/dso development by creating an account on GitHub.

I'd like to share DSO, a command line helper to build reproducible data science projects with ease.

It is an opinionated way to organize data science projects, built around data version control (DVC).

github.com/Boehringer-I...

05.02.2025 18:32 โ€” ๐Ÿ‘ 12    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

We had an amazing time at the 2-day Hackathon at @i-med.ac.at ! Can't wait for the next one! ๐Ÿš€

01.02.2025 13:18 โ€” ๐Ÿ‘ 8    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Our Nextflow in Genomics workshop kicks off tomorrow!
Excited to dive into imputation with @sebschoenherr.bsky.social and @lukfor.bsky.social

#nf-genomics #freeimputation

29.01.2025 21:04 โ€” ๐Ÿ‘ 8    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

Looking forward to great discussions, learning, and sharing insights. Busy but productive days ahead!

29.01.2025 10:56 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

yep :)

22.01.2025 15:02 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

I learned the hard way today: SimpleDateFormat in Java is NOT thread-safe! #java

22.01.2025 14:54 โ€” ๐Ÿ‘ 5    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Yes, but can it run Doom?

`nextflow run doom`

โœ… @nextflow.io (by @jordeu.bsky.social ๐ŸŒŸ)
github.com/nextflow-io/...

22.01.2025 08:11 โ€” ๐Ÿ‘ 46    ๐Ÿ” 12    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 1
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GeoGuessr - Sรผdtirol Explore this map by lukfor on GeoGuessr

Fรผr die #Geoguessr Spieler unter uns: eine Map mit ca. 9.900 locations aus #Sรผdtirol. Viel SpaรŸ! ๐Ÿ“ www.geoguessr.com/maps/678e0b0...

20.01.2025 18:07 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Looking forward to spending two days working on the imputation server with fantastic people! Thanks to @seqera.io, @ewels.bsky.social and @chrishakk.bsky.social for sending us stickers ๐Ÿ™

16.01.2025 18:51 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

For anyone who hasnโ€™t already read the article, this is a pretty great video from Prime on it.

curiouscoding.nl/posts/static...

10.01.2025 14:26 โ€” ๐Ÿ‘ 11    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

@lukfor is following 19 prominent accounts