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Keith Durkin

@keithdurkin.bsky.social

Long read sequencing in human and animal genomics, also the odd bit of virology. Irish living in Belgium.

264 Followers  |  680 Following  |  29 Posts  |  Joined: 24.07.2023  |  1.7641

Latest posts by keithdurkin.bsky.social on Bluesky

Was living the US during the peak Celtic Tiger years, came home over the thanksgiving holidays in ~2007, Newark/Shannon flight was packed with giddy groups of women on New York Christmas shopping trips.

04.08.2025 11:20 β€” πŸ‘ 5    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Kennedy Withdraws U.S. Funding Pledge to International Vaccine Agency

Mass murderer.

(gift link)

26.06.2025 06:12 β€” πŸ‘ 3399    πŸ” 1198    πŸ’¬ 163    πŸ“Œ 151
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MUST SEE: Congresswoman Schrier nails conspiracy theorist and unfortunate HHS Secretary, RFK Jr., on the value of vaccinesβ€”and it’s glorious.

Schrier also happens to be the first pediatrician in Congress.

24.06.2025 22:46 β€” πŸ‘ 12570    πŸ” 4259    πŸ’¬ 629    πŸ“Œ 269
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Our sister died because of our mum's cancer conspiracy theories, say brothers Paloma Shemirani’s brothers say she refused chemotherapy because of their mother’s beliefs.

www.bbc.co.uk/news/article...

23.06.2025 09:10 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Restrictions had unequal impacts, but the pandemic itself did too. - Boston Review Adam Kucharski responds to Stephen Macedo and Frances Lee.

New piece on why it’s unhelpful to characterise COVID debate as β€˜lockdowns are bad’ vs β€˜lockdowns are good’ when it was really about people who claimed that COVID was 100x less fatal than it was + optimal to have a massive epidemic immediately before vaccine… vs those who sense checked these claims.

19.06.2025 15:08 β€” πŸ‘ 646    πŸ” 191    πŸ’¬ 22    πŸ“Œ 23
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RFK Jr. Removes All CDC Vaccine Panel Experts (Gift Article) The U.S. health secretary chose to β€œretire” members of a committee that makes significant decisions about who receives immunizations, including the vaccines for children.

β€œThis is an unmitigated public health disaster,” said Dr. Sean O’Leary, chair of the infectious disease committee for the American Academy of Pediatrics. Story by @apoorvanyt.bsky.social Gift link: nyti.ms/4mV37YK

10.06.2025 02:24 β€” πŸ‘ 452    πŸ” 178    πŸ’¬ 19    πŸ“Œ 16
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πŸ“£ Latest from the lab: Performance of deep-learning-based approaches to improve polygenic scores www.nature.com/articles/s41...

Its thought deep learning will substantially improve PGS but the reality is MANY have tried but no/little gain has been seen so far. Here we report our negative results.

05.06.2025 13:36 β€” πŸ‘ 197    πŸ” 82    πŸ’¬ 4    πŸ“Œ 12
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Ambitious project to develop low-cost genome sequencing for pathogens known and unknown - University of Birmingham Project will build on research that helped diagnostic labs to adopt sequencing capacity for COVID-19 and permit characterisation of future infectious threats

Absolutely thrilled to announce the launch of ARTIC2 - a Β£5.5M 5 year project funded by @wellcometrust.bsky.social to build on the ARTIC approach of low-cost, globally accessible genome sequencing for surveillance of outbreaks, epidemics and endemic diseases: www.birmingham.ac.uk/news/2025/am...

22.05.2025 10:57 β€” πŸ‘ 228    πŸ” 80    πŸ’¬ 7    πŸ“Œ 4
TWiV 1217: Alternative vax and pandemic origins TWiV reviews new CBER chief at FDA, ending of Gates Foundation in 2045, gain of function executive order, origins of bat viruses ancestral to SARS-CoV and SARS-CoV-2, and single dose Sudan virus repli...

www.microbe.tv/twiv/twiv-12...
Latest This week in virology has a nice discussion of the recent cell paper from @sdellicour.bsky.social and colleges on bat viruses ancestral to SARS-CoV-2

12.05.2025 07:58 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Robert F. Kennedy Jr will require all new vaccines to undergo placebo testing, WaPo reports U.S. Health and Human Services Secretary Robert F. Kennedy Jr intends to shift the way vaccines are tested, The Washington Post reported on Wednesday, citing a spokesperson from the HHS.

Just to be clear, this is a violation of the fundamental ethical principle in clinical trial design called "equipoise."

Equipoise means that no-one is exposed to excess risk just to test the therapy. That's specifically *why* vaccine trials don't use placebo arms.

Ethical violation as POLICY.

01.05.2025 12:17 β€” πŸ‘ 12371    πŸ” 4597    πŸ’¬ 543    πŸ“Œ 497
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oprah winfrey is wearing a red dress and holding a microphone while dancing on a stage . ALT: oprah winfrey is wearing a red dress and holding a microphone while dancing on a stage .

you get a T2T, you get a T2T, you get a T2T..

18.04.2025 14:57 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

The mayo of sumo

09.04.2025 15:28 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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John Hemingway obituary: Last surviving Battle of Britain pilot He was shot down twice in the space of eight days, but went on to outlive all his contemporaries
31.03.2025 11:35 β€” πŸ‘ 11    πŸ” 4    πŸ’¬ 0    πŸ“Œ 1
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Epigenetic signatures of intergenerational exposure to violence in three generations of Syrian refugees - Scientific Reports Scientific Reports - Epigenetic signatures of intergenerational exposure to violence in three generations of Syrian refugees

I can't believe we're still allowing completely inadequate and uninterpretable Epigenome-Wide Association Studies (EWAS) to be published.

I don't care that this study is probably well-intentioned, and probably trying to draw attention to awful events in Syria.

www.nature.com/articles/s41...

01.03.2025 16:51 β€” πŸ‘ 79    πŸ” 32    πŸ’¬ 4    πŸ“Œ 10
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@charles_h_martin, not on #Bluesky, on #23andMe

27.03.2025 16:56 β€” πŸ‘ 59    πŸ” 15    πŸ’¬ 6    πŸ“Œ 5
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H.H.S. Scraps Studies of Vaccines and Treatments for Future Pandemics (Gift Article) Federal officials cited the end of the Covid-19 pandemic in halting the research. But much of the work was focused on preventing outbreaks of other pathogens.

"Angry, disappointed, frustrated"--Scientists were making progress on vaccines and antivirals for the next pandemic--until this week, when the Trump administration abruptly told them to stop. Here's my story with @apoorvanyt.bsky.social Gift link: nyti.ms/43Xz77q

26.03.2025 21:57 β€” πŸ‘ 1313    πŸ” 734    πŸ’¬ 60    πŸ“Œ 65
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HHS Pulled Funds for HIV Research at 22 Universities The Trump administration pulled around $34 million in HIV-related grants.

The Trump administration’s Department of Health and Human Services terminated around 60 federal grants supporting HIV and HIV prevention-related research over the past five weeks www.notus.org/health-scien...

25.03.2025 15:42 β€” πŸ‘ 42    πŸ” 31    πŸ’¬ 0    πŸ“Œ 5

Sorry to see that Flow, massive respect for all you do, dont know how you have the strength to wade through the lab leak nonsense and put up with the personal attacks when you call out their BS.

21.03.2025 08:43 β€” πŸ‘ 5    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

People do forget how common zoonotic exposure is. In this study 12% of people working in the guano industry in Myanmar were seropositive for sarbecoviruses: pmc.ncbi.nlm.nih.gov/articles/PMC...

19.03.2025 20:36 β€” πŸ‘ 23    πŸ” 13    πŸ’¬ 0    πŸ“Œ 1

In utero was the first nirvana album I bought, wore out the tape

19.03.2025 11:09 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Tool Γ†nima

19.03.2025 11:07 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image Post image 19.03.2025 09:42 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

I had forgotten about that madness, suddenly everyone was a expert on Ct thresholds.

17.03.2025 13:59 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Great thread, thanks

12.03.2025 10:51 β€” πŸ‘ 27    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Do you remember BA.3β€”the weakling cousin of BA.1 & BA.2 that seemed to take the worst from each & had weaker ACE2 binding than even the ancestral Wuhan Virus?

After three years, BA.3 is back.

And it is transmitting.

Who saw this coming?
1/13

12.03.2025 10:46 β€” πŸ‘ 488    πŸ” 189    πŸ’¬ 26    πŸ“Œ 50

As you read this "Exclusive" on the lead FBI agent spilling the beans on their "SARS-CoV-2 came from a lab", the thing that sticks out is the fact that they have absolutely nothing suggesting it did. Bupkis.

It's the same ignorant misrepresentations and conspiracy theories, πŸ‘‡ being but one example.

28.02.2025 01:13 β€” πŸ‘ 92    πŸ” 33    πŸ’¬ 3    πŸ“Œ 1
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RFK Jr. Vows To Make Measles Deaths So Common They Won’t Be Upsetting Anymore WASHINGTONβ€”Addressing the ongoing outbreak in Texas that has infected at least 124 state residents and killed one child, Health and Human Services Secretary Robert F. Kennedy Jr. vowed Thursday to mak...

RFK Jr. Vows To Make Measles Deaths So Common They Won’t Be Upsetting Anymore

27.02.2025 20:00 β€” πŸ‘ 23117    πŸ” 4876    πŸ’¬ 473    πŸ“Œ 393
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Opinion | The Pharmaceutical Industry Heads Into Elon Musk’s Wood Chipper (Gift Article) Who needs N.I.H. grants? A lot of red-state universities, for one.

"Every $100 million in investment leads to 78 patents and $598 million in further research, according to N.I.H. calculations"

Or $100 million will get the taxpayer one Falcon 9 launch with SpaceX

www.nytimes.com/2025/02/11/o...

11.02.2025 12:34 β€” πŸ‘ 14    πŸ” 8    πŸ’¬ 2    πŸ“Œ 1

American science and medicine has been thrown into chaos and uncertainty over the past week. Here are some stories to get up to speed. 1/12

28.01.2025 03:58 β€” πŸ‘ 1843    πŸ” 1155    πŸ’¬ 63    πŸ“Œ 189
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Huge performance update in today’s dorado v0.9.1 release on Ampere 8.6/8.7 & Ada Lovelace 8.9 nvidia GPUs with up to 2x increase in throughput with hac calling and 3x sup! πŸš€

Plus a whole bunch of updates for dorado polish and the odd misc bug fix.

github.com/nanoporetech...

21.01.2025 15:12 β€” πŸ‘ 19    πŸ” 9    πŸ’¬ 1    πŸ“Œ 2

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