Johannes Lotz's Avatar

Johannes Lotz

@johannes.lotz.dev

Scientist in Computational Pathology @FraunhoferMEVIS / @uniluebeck.bsky.social, Vorstand im KIKS e.V. in Lübeck. fedi: @johanneslotz@scholar.social, joha1o@chaos.social #pathology #computationalpathology

95 Followers  |  189 Following  |  20 Posts  |  Joined: 19.10.2023  |  2.0341

Latest posts by johannes.lotz.dev on Bluesky

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Had fun presenting with Carol Geppert at #ecdp2025.

Our poster “Image registration accelerates (pathology) diagnostics” shows that #imageregistration saves one minute (33%) per case in our pilot study!

Could not make it? Have a look the poster s.x91.de/ecdpposter and video s.x91.de/tnvideo

27.06.2025 09:41 — 👍 2    🔁 0    💬 0    📌 0
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I have chills

RCV is a structure to build durable coalitions

Think how much healthier this is for the local party, for the city, for the actual final outcome

Sorkin-sentimental fantasy to imagine a politics like this

14.06.2025 04:06 — 👍 766    🔁 122    💬 15    📌 13
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Live updates: Conclave elects Cardinal Robert Prevost to be Pope | CNN Cardinal Robert Prevost of the United States has been selected as the next pope, the first American pontiff in history. Follow here for the latest.

Adding yet another job to the “what can I do with a bachelor’s in math?” list 💪 #mathSky #iTeachMath

08.05.2025 20:05 — 👍 67    🔁 9    💬 3    📌 0

Man muss in der Debatte um die AfD daran erinnern, dass das Grundgesetz nicht irgendeine liberale Verfassung ist. Es ist die Antithese zum NS-Staat. Die Bundesrepublik ist politisch keine ergebnisoffene Veranstaltung. Grundrechte, Demokratie- und Rechtsstaatsprinzip sind dauerhaft festgelegt.

04.05.2025 18:10 — 👍 3007    🔁 939    💬 33    📌 24
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NEW 🧵

The number of people travelling from Europe to the US in recent weeks has plummeted by as much as 35%, as travellers have cancelled plans in response to Trump’s policies and rhetoric, and horror stories from the border.

Story: www.ft.com/content/6dc1...

11.04.2025 19:03 — 👍 5494    🔁 2134    💬 246    📌 414
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Do foundation models in medical imaging see everyone fairly?🤔

Excited to share our new Science Advances paper uncovering & auditing demographic biases of expert-level VLMs, and comparing to board-certified radiologists🧑‍⚕️

📄science.org/doi/10.1126/sciadv.adq0305
💻github.com/YyzHarry/vlm-fairness
(1/)

28.03.2025 20:01 — 👍 28    🔁 7    💬 1    📌 0
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French scientist denied US entry after phone messages critical of Trump found France’s research minister said the scientist was traveling to Houston for a conference when his phone was searched

Breaking: US authorities thwart an attempt to smuggle sanity into the country.

www.theguardian.com/us-news/2025...

19.03.2025 22:32 — 👍 6    🔁 1    💬 0    📌 0

Wie war das mit den Tassen? Völlig absurd.

11.03.2025 20:45 — 👍 1    🔁 0    💬 0    📌 0

Schön auch dazu:

BM Bastian Langbehn (fraktionslos) Änderungsantrag zu - AM Andreas Zander (CDU)

Beschlussvorschlag
In die Liste der Unterstützer:innen werden
Die Unklar.Bar
Die PARTEI Lübeck
mit aufgenommen.

1/2

11.03.2025 13:46 — 👍 4    🔁 1    💬 1    📌 0
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Politik Informationssystem Lübeck - Rathaus

In Lübeck stellt die CDU ebenfalls so eine Anfrage und listet u.a. Schüler:innenvertretungen einiger Lübecker Schulen auf. www.luebeck.de/de/rathaus/p...

11.03.2025 06:35 — 👍 186    🔁 70    💬 10    📌 19

Amerika diskutiert das Ende der Sommerzeit und nicht mal Trump gelingt es (weil die einen Sommer-, die anderen Winterzeit wollen). Aber: Hawaii und Arizona sind schon weiter. Lasst es uns auch so machen: Wenn Schleswig-Holstein bei Winterzeit bleibt, dauert die Zugfahrt Lübeck-Hamburg nur -16 min.

08.03.2025 19:45 — 👍 4    🔁 1    💬 1    📌 0
Cartoon showing a woman looking in to a microscope saying "Whoaah!!!" The caption states "The best part of Science is knowing, for a moment, something that nobody else in the world knows"

Cartoon showing a woman looking in to a microscope saying "Whoaah!!!" The caption states "The best part of Science is knowing, for a moment, something that nobody else in the world knows"

A reminder in these hard times. #sciencestrong

19.02.2025 06:14 — 👍 137    🔁 45    💬 3    📌 3

If pubmed is inaccessible at the moment, try @europepmc.org

01.03.2025 17:31 — 👍 127    🔁 76    💬 5    📌 11
Eine simple Strichmännchen-Zeichnung: Links steht eine Figur mit beiden Händen an den Kopf gefasst, die laut “Aaaaaaaah!!!” schreit. Ein Zickzack-Blitz symbolisiert den Schrei. Rechts stehen zwei andere Strichmännchen. Das eine sagt zum anderen: “Er spricht aus, was viele denken.” Die Zeichnung ist mit “@kriegundfreitag” signiert.

Eine simple Strichmännchen-Zeichnung: Links steht eine Figur mit beiden Händen an den Kopf gefasst, die laut “Aaaaaaaah!!!” schreit. Ein Zickzack-Blitz symbolisiert den Schrei. Rechts stehen zwei andere Strichmännchen. Das eine sagt zum anderen: “Er spricht aus, was viele denken.” Die Zeichnung ist mit “@kriegundfreitag” signiert.

Hier eine erste Analyse der Situation.

28.02.2025 19:18 — 👍 1738    🔁 377    💬 16    📌 12
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Da haben die Kolleg*innen eine gute Seite eins hinbekommen. Ganz kleine Anfrage an die Union: Noch alle Tassen im Schrank? Nailed it.

26.02.2025 17:32 — 👍 2653    🔁 735    💬 36    📌 26

Really disappointed how slowly Europe (especially Germany) is moving these days
Obviously, to compete with US/China on any relevant topic (AI / economy / defense), we need more European integration, joing funding, joint efforts - and much much faster
more resources: eu-acc.com @euacc.bsky.social

18.02.2025 10:15 — 👍 13    🔁 2    💬 0    📌 1

Approximately 10% of the NIH staff were fired yesterday. Barely anyone outside of the scientific community noticed, and I'd wager a sizeable number of NIH funded PIs have no idea either.

15.02.2025 14:15 — 👍 13    🔁 7    💬 0    📌 0
Improvements in LM (top) and EM (bottom) of our micro-sam model (finetuned) compared to the default SAM model.

Improvements in LM (top) and EM (bottom) of our micro-sam model (finetuned) compared to the default SAM model.

After a long journey, Segment Anything for Microscopy is now published in Nature Methods! We significantly improve SAM for interactive and automatic segmentation in light and electron microscopy and build a user-friendly tool.
www.nature.com/articles/s41...

12.02.2025 11:41 — 👍 350    🔁 121    💬 12    📌 7

To be clear: was hilft gegen Influenza?
1. Impfung

(lange nichts)

(Sehr lange nichts)

Dann irgendwann Maske tragen, desinfizieren und Abstand halten.
Aber -

04.02.2025 19:40 — 👍 254    🔁 28    💬 5    📌 3
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Trump hits NIH with ‘devastating’ freezes on meetings, travel, communications, and hiring Researchers facing

Trump hits NIH with ‘devastating’ freezes on meetings, travel, communications, and hiring www.science.org/content/arti...

23.01.2025 00:15 — 👍 321    🔁 132    💬 17    📌 12

Big shoutout to @tillnitus.bsky.social (who did the lion’s share of the work 🦁), to our co-authors Raphael Schäfer, Henning Höfener, Friedrich Feuerhake, Dorit Merhof, and Fabian Kießling and to the whole team at FraunhoferMEVIS! Special thanks to the reviewers for their constructive feedback!
🧵5/5

10.01.2025 11:43 — 👍 1    🔁 0    💬 0    📌 0
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GitHub - FraunhoferMEVIS/MedicalMultitaskModeling: Training foundational medical imaging models using multi-task learning. Training foundational medical imaging models using multi-task learning. - FraunhoferMEVIS/MedicalMultitaskModeling

You can already find the base model on GitHub (github.com/FraunhoferME...), the pathology-specific model will follow shortly.

🧵4/5

10.01.2025 11:43 — 👍 0    🔁 0    💬 1    📌 0

... CTransPath (by Wang et al., doi.org/10.1016/j.me...) and additionally, we observed similar results when comparing against the larger UNI model (by Chen et al., doi.org/10.1038/s415..., see the appendix for more details).

🧵3/5

10.01.2025 11:43 — 👍 0    🔁 0    💬 1    📌 0
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“Tissue Concepts” is a resource-efficient foundation model for pathology. We trained with only 6% of the data compared to other (self-supervised) models, and it maintained great performance.

It outperforms self-supervised learning when the model is of similar size (we compared to ...
🧵2/5

10.01.2025 11:43 — 👍 1    🔁 0    💬 1    📌 0
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Our paper on Tissue Concepts is finally out in JCompBiomed 🥳: Supervised pre-training of foundation models needs fewer data and less compute/energy to analyze pathology whole-slide images.

How? Read more here: doi.org/10.1016/j.co...

🧵1/5

10.01.2025 11:43 — 👍 6    🔁 2    💬 1    📌 0
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I missed this one last month. New AI tool predicts gene expression from pathology slide images:

Digital profiling of gene expression from histology images with linearized attention https://www.nature.com/articles/s41467-024-54182-5 🧬🖥️🧪 https://github.com/gevaertlab/sequoia-pub

16.12.2024 21:00 — 👍 16    🔁 7    💬 0    📌 1
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Eleven quick tips for properly handling tabular data https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012604 🧪 #Rstats

01.12.2024 20:57 — 👍 29    🔁 17    💬 3    📌 0
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Zugverspätungen: Der ehrliche Fahrplan: Mit welchem Zug Sie rechtzeitig ankommen Sie müssen pünktlich zu einem Termin ankommen? Unser Tool zeigt, ob das mit Ihrer Verbindung realistisch ist. Wenn nicht, haben wir eine zuverlässige Alternative für Sie.

Wir sind an dem Punkt, an dem mit Hilfe von statistischen Daten und Algorithmen die Wahrscheinlichkeit von Verspätungen bei der Bahn recht zuverlässig berechenbar ist.

Paywall > Freebie/Geschenklink

29.11.2024 11:03 — 👍 0    🔁 1    💬 0    📌 0
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Gleason 6: should we keep calling it cancer?
Eva Compérat

Yes‼️ It’s cancer
✨People may die from GS 6
✨Up to 80% heterogeneous
✨We can not predict those who will progress
‼️Patient will be much more willing to be followed
@oncoalert.bsky.social
@drnataliagandur.bsky.social
@yukselurun.bsky.social

29.11.2024 16:50 — 👍 4    🔁 3    💬 0    📌 0

Hi, I would be happy to be added!

29.11.2024 14:52 — 👍 0    🔁 0    💬 0    📌 0

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