Rayyan

We’ve built this virtual plant scientist PlantScience.ai to grow alongside human researchers🌿. It thinks like an expert, cites like a scholar, and never stops learning. Come and have a chat with it! @yiliangding.bsky.social @johninnescentre.bsky.social
www.biorxiv.org/content/10.1...

Congrats, Joe Ecker @salkinstitute.bsky.social, to receiving the McClintock Prize! Joe has been a visionary leader of the field of genetics and genomics – not only for plants – for decades
www.salk.edu/news-release...

Transposable elements are vectors of recurrent transgenerational epigenetic inheritance DNA methylation loss at transposable elements (TEs) can affect neighboring genes and be epigenetically inherited in plants, yet the determinants and significance of this additional system of inheritan...

Out First Release in @science.org this week:

A large scale analysis of the epigenetics of transposable elements in Arabidopsis shows transgenerational stability

www.science.org/doi/10.1126/...

#PlantScience

New Article: "Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations" rdcu.be/eGD0G

With News & Views: "Adaptation beyond the DNA sequence" rdcu.be/eGD03

✨Redefining epigenetic variation in evolution. Our @NaturePlants paper shows gene body DNA methylation as a major force shaping expression, traits, and adaptation in plants. Synergy with Shahzad @ShahzadZaigham & Zilberman Labs—congrats🎉. rdcu.be/eFRJy @MSU_PRI

Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations - Nature Plants This study shows that epigenetic gene body DNA methylation regulates transcription and accounts for much of its variance in the Arabidopsis population, efficiently identifies genes regulating diverse ...

Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations
www.nature.com/articles/s41...

Drought recovery in plants triggers a cell-state-specific immune activation - Nature Communications Post-drought rehydration triggers a preventive immune response in plants, revealing targets to enhance crop resilience by linking drought stress recovery with improved pathogen resistance.

Our #research on #drought #recovery, now published with @springernature.com in @natcomms.nature.com:
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...

Read thread below 👇

On the cover of @natplants.nature.com this month:

@leobaumgart.bsky.social @greensi.bsky.social @abmora.bsky.social @omalley-regulome.bsky.social et al. map binding sites for 360 TFs across 10 🌿plant🌿 species using a new multiDAP approach

Here is Sharon's explainer 🧵:
bsky.app/profile/gree...

A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle - Nature Plants This study presents an extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents ten distinct developmental time points inclusive of six diverse organs.

From a gene’s single cell expression–through spatial localization–to novel function, and beyond!
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...

Out after peer review, collaborative study from Nordborg & Weigel labs with help from many others. Not the largest collection of new Arabidopsis thaliana genomes, but we hopefully put forward some good ideas for how to think about pangenomes and their analysis!
www.nature.com/articles/s41...

Thrilled to have our spatial single-cell atlas of the Arabidopsis lifecycle in @NaturePlants. Turns out that its easy to make nice images when spatial expression of 1,000 genes is available! 1/n
@natanellae.bsky.social @tatsuyanobori.bsky.social @joeecker.bsky.social

www.nature.com/articles/s41...