Introducing Dirigo #4: Unit quantities
Iβm writing posts to introduce Dirigo, a flexible image acquisition framework targeting laser scanning applications. Previous posts: #1: Intro, #2: Acquisition pipeline composition, #3: Hardware inter...
π¬ π¬ New post in the "Introducing Dirigo" series: Unit quantities
Why units matter (think 100 Β΅m vs 100 mm π¬), parsing β400 umβ/β8 kHzβ/"125 MS/s", expressive types, and unit-checked math.
Dirigo achieves this with a light-weight Pint-inspired layer used everywhere units are relevant.
18.09.2025 12:25 β π 0 π 0 π¬ 0 π 0
Introducing Dirigo β Post #3: Hardware extensibility & the Digitizer interface
Iβm writing weekly posts to introduce Dirigo, a flexible image acquisition framework for Python. In the last post, I introduced the reconfigurable acquisition pipeline. In this post, Iβll describe har...
π¬ New post in the "Introducing Dirigo" series! (my project to build a flexible backend for sci. image acquisition)
This week: the Digitizer interfaceβhow to abstract the main data-collection device in laser-scanning microscopy to support different cards through a single, oscilloscope-inspired API.
25.08.2025 14:38 β π 1 π 0 π¬ 0 π 0
New post in the "Introducing Dirigo" series!
In this one, I share a short video clip demo & walk through how Dirigo organizes image acquisition as a reconfigurable dataflow graph.
π forum.image.sc/t/introducin...
19.08.2025 15:46 β π 2 π 0 π¬ 0 π 0
Designing Dirigo: a flexible, extensible backend for scientific image acquisition
Some time ago, on a certain social platform that has since been renamed, I asked for suggestions on laser scanning microscopy acquisition control software. I was looking for something in the spirit of...
Just posted Part 1 of a new series on "Dirigo", my design for a very flexible, extensible backend for scientific image acquisition.
Iβll be posting weekly to spark feedback and find collaborators.
This first post covers the intro & high-level design. π
11.08.2025 17:23 β π 0 π 0 π¬ 0 π 0
Where engineers launch and sell the world's best hardware
Bringing original, useful, respectful open hardware into existence.
I see strides being made in open source electronics www.crowdsupply.com may be easier here because scalability (PCB fab, pick and place, etc). What would this look like for a microscope frame?
13.02.2025 16:20 β π 1 π 0 π¬ 0 π 0
'Open source' is a great concept--but I think the bottleneck is fabrication. We need a low-cost partner building open designs at reasonable scale. Open source works so well for software because the 'fabrication' is simply computer execution (+/-compiling and distribution).
13.02.2025 16:19 β π 1 π 0 π¬ 1 π 0
So much fun writing a K99 through this..
28.01.2025 13:31 β π 0 π 0 π¬ 1 π 0
Do you think it's trolling you (which would be kinda brilliant) or is this really its best shot?
28.01.2025 13:29 β π 1 π 0 π¬ 1 π 0
Don't sleep on Strava
02.12.2024 14:27 β π 1 π 0 π¬ 1 π 0
A scientific journal publishing cutting-edge advances at the intersection of the life and physical sciences. Posts by the editors.
Prof. Sorbonne UniversitΓ© / @comedialkb.bsky.social / @lkblab.bsky.social | ENS Paris | Interested in Physics, but also imaging, computing, quantum optics and in the beauty and applications of light in general | proud dad & Husband | he/him
Imaging Scientist at Harvard Center for Biological Imaging. I help people do cool science. Lover of all
things microscopy & microbiology π¬π¦
Still seeking M. Ulder for joint author paper.
Microscopes β
cats β
combining the two β
Lab --> https://www.kcl.ac.uk/research/culley-group
Microscopist & Python developer at Harvard Med. Creator @fpbase.org
tries to make microscopes smarter Β· bioimage analysis, optogenetics, ml, 3d printing, open science Β· phd student in cellular signalling dynamics @PertzLab
Developing hardware + software tools for large-scale imaging at the Allen Institute for Neural Dynamics
Applied physicist & microscopist/microscopologist
Chief Editor of Nature Biomedical Engineering. Ph.D. Previously at Nature Methods. @rita_strack on the place formerly known as twitter.
(he/him) Light microscopy scientist interested in developing and deploying better live-cell fluorescence microscopy technology. Tweets about microscopyπ¬, cell biology, and optics. Conflicts of interest: http://tinyurl.com/y25ctubo
The official account for the Life Science Solutions division of the Nikon Healthcare Business, with a focus on biological microscopy products and services for the life science, biotech/pharma, and clinical laboratory markets.
n-dimensional image viewer for Python
At the junction of optics, neuroscience, ophthalmology and bioengineering.
https://aria.cvs.rochester.edu/our_work/blood_flow.html
recovering alpinist and scientist.
Chunked, Compressed, & Cloud-native N-dimensional arrays
See https://zarr.dev/ for more information.
Optical imaging, interested in STEM topics.
First generation graduate from ETH ZΓΌrich
Associate Professor at UT
Southwestern Medical Center