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Balázs Knakker

@bknakker.bsky.social

doing cognitive neuroscience, interested in stats and computational methods.

70 Followers  |  169 Following  |  10 Posts  |  Joined: 31.08.2023  |  1.6979

Latest posts by bknakker.bsky.social on Bluesky

This paper had a pretty shocking headline result (40% of voxels!), so I dug into it, and I think it is wrong. Essentially: they compare two noisy measures and find that about 40% of voxels have different sign between the two. I think this is just noise!

05.01.2026 17:22 — 👍 232    🔁 98    💬 8    📌 9

I use the restart hotkey in RStudio and I see the restart button in Positron, but what I really mean is that instead of just "source", there would be a "restart R + source" button - and I don't see this in Positron either. Maybe it's just me who misses this :)

06.01.2026 13:59 — 👍 1    🔁 0    💬 0    📌 0
Preview
Restart R and source script button · Issue #15854 · rstudio/rstudio Problem Statement When analyzing data, frequently restarting R and sourcing a script is a good idea. This can be done in 2 steps while this is a very-very frequent thing to do. Many times sourcing ...

I think, for the same reason, IDEs should have a button for "Restart R session and source script". Do you think that is a good idea? I posted this feature request for RStudio, maybe it can get some traction here: github.com/rstudio/rstu...

06.01.2026 12:41 — 👍 1    🔁 1    💬 1    📌 0

That would be great!

31.08.2025 09:25 — 👍 1    🔁 0    💬 0    📌 0
Slide titled: "Assumptions of the model and model checking"
with a scatterplot with axes how much people should worry vs how much people do worry.

Slide titled: "Assumptions of the model and model checking" with a scatterplot with axes how much people should worry vs how much people do worry.

this slide is from a colleague's introductory stats course, I think it fits many statisticians' experiences

18.08.2025 00:31 — 👍 93    🔁 24    💬 8    📌 2
Image of brain networks in a group average and individual LPFC. Individuals show:
1) smaller FP network
2) more interdigitation
3) conserved motifs
4) idiosyncratic features
This was validated with task and rest fMRI

Image of brain networks in a group average and individual LPFC. Individuals show: 1) smaller FP network 2) more interdigitation 3) conserved motifs 4) idiosyncratic features This was validated with task and rest fMRI

The lateral prefrontal cortex 🧠— which we think of as critical for goal driven behavior + is a target for psychiatric treatments— is fundamentally different in individuals relative to the group averages we’ve often studied.

👇see preprint and thread, led by Zach Ladwig
#neuroskyence #PsychSciSky

14.08.2025 15:15 — 👍 82    🔁 30    💬 3    📌 5
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Brain mechanisms underlying the inhibitory control of thought - Nature Reviews Neuroscience The capacity to prevent unwanted thoughts is important for cognitive function and mental health. Anderson et al. describe insights into the neural mechanisms of the inhibitory control of thought that ...

How does the brain stop thoughts? Find out in my article in @natrevneuro.nature.com with Subbu Subbulakshmi & Maite Crespo-Garcia www.nature.com/articles/s41... that integrates 25 yrs of psychology and neuroscience on this vital function.@mrccbu.bsky.social sky.social #neuroskyence #neuroscience

20.05.2025 09:36 — 👍 90    🔁 39    💬 2    📌 2

You also seem to imply, but definitely 🐇 AND 💤. For me: Rr for exploring literature via citation graphs, Zz mostly for citation. I'm trying to use Zz for storing and keeping track of papers but I'm not completely satisfied. I'd put Obsidian in the stack as well, as a third leg.

16.06.2025 16:37 — 👍 1    🔁 0    💬 0    📌 0

I just read the following quote from Mel Robbins, presented as if it were good advice. It makes me shudder:

“You’ll never feel ready to change your life. One day you just get tired of your own excuses and force yourself to do it.”

There is so much badness in that single sentence.
1/10

25.05.2025 02:28 — 👍 15    🔁 4    💬 2    📌 0
Post image

Our new paper - the first peer-reviewed brain and phenomenological examination of 5-MeO-DMT is out in Neuro of Consciousness.

TLDR: We tested whether ‘the mount Everest’ of psychedelics could induce a complete state of consciousness deconstruction while preserving awareness. 1/n

#neuroskyence

23.04.2025 14:06 — 👍 37    🔁 12    💬 3    📌 1

Excited to share our latest paper!

We argue that in MS, the primary immune attack isn’t on myelin or myelinated axons — but on the ion & water homeostasis machinery in astrocyte endfeet.

A short thread on this new perspective

1/11

07.04.2025 21:09 — 👍 41    🔁 22    💬 2    📌 2
Post image

🔬 The Predicting Replicability Challenge seeks innovative teams to help transform how research credibility & trustworthiness are assessed.

Open to participants globally. 💰 prizes awarded to top teams in each round!

Learn more & submit a statement of interest by 8/18/25: www.cos.io/predictin...

05.03.2025 17:30 — 👍 8    🔁 9    💬 0    📌 2
Excerpt from a public letter Roald Dahl wrote encouraging people to vaccinate their children.

Olivia, my eldest daughter, caught measles when she was seven years old. As the illness took its usual course I can remember reading to her often in bed and not feeling particularly alarmed about it. Then one morning, when she was well on the road to recovery, I was sitting on her bed showing her how to fashion little animals out of coloured pipe-cleaners, and when it came to her turn to make one herself, I noticed that her fingers and her mind were not working together and she couldn’t do anything.

“Are you feeling all right?” I asked her.

“I feel all sleepy,” she said.

In an hour, she was unconscious. In twelve hours she was dead.

The measles had turned into a terrible thing called measles encephalitis and there was nothing the doctors could do to save her. That was twenty-four years ago in 1962, but even now, if a child with measles happens to develop the same deadly reaction from measles as Olivia did, there would still be nothing the doctors could do to help her.

On the other hand, there is today something that parents can do to make sure that this sort of tragedy does not happen to a child of theirs. They can insist that their child is immunized against measles. I was unable to do that for Olivia in 1962 because in those days a reliable measles vaccine had not been discovered. Today a good and safe vaccine is available to every family and all you have to do is to ask your doctor to administer it.

Excerpt from a public letter Roald Dahl wrote encouraging people to vaccinate their children. Olivia, my eldest daughter, caught measles when she was seven years old. As the illness took its usual course I can remember reading to her often in bed and not feeling particularly alarmed about it. Then one morning, when she was well on the road to recovery, I was sitting on her bed showing her how to fashion little animals out of coloured pipe-cleaners, and when it came to her turn to make one herself, I noticed that her fingers and her mind were not working together and she couldn’t do anything. “Are you feeling all right?” I asked her. “I feel all sleepy,” she said. In an hour, she was unconscious. In twelve hours she was dead. The measles had turned into a terrible thing called measles encephalitis and there was nothing the doctors could do to save her. That was twenty-four years ago in 1962, but even now, if a child with measles happens to develop the same deadly reaction from measles as Olivia did, there would still be nothing the doctors could do to help her. On the other hand, there is today something that parents can do to make sure that this sort of tragedy does not happen to a child of theirs. They can insist that their child is immunized against measles. I was unable to do that for Olivia in 1962 because in those days a reliable measles vaccine had not been discovered. Today a good and safe vaccine is available to every family and all you have to do is to ask your doctor to administer it.

The measles outbreak in Texas is reminding me of the public letter Roald Dahl wrote about losing his daughter to measles in 1962, just before the vaccine was publicly available.

15.02.2025 17:48 — 👍 26749    🔁 11766    💬 403    📌 548
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Resources, costs and long-term value: an integrative perspective on serotonin and meta-decision making Serotonin has been associated with a wide range of neural computations and behaviours, yet an overarching function of this neurotransmitter has been h…

So, here we go: hello Bluesky! Reposting the last one from my Twitter. Looking forward to connecting!

Resources, costs and long-term value: an integrative perspective on serotonin and meta-decision making - new article out! Much enjoyed writing this together www.sciencedirect.com/science/arti...

03.12.2024 19:03 — 👍 7    🔁 3    💬 0    📌 0

this is very cool!

27.11.2024 08:45 — 👍 0    🔁 0    💬 0    📌 0

Hi #neuroskyence and #PsychSciSky friends! 🧪🧠⏰

The Timing Research Forum is now on Blue Sky! We're a 1500+ strong group of researchers devoted to studying the psych/neuro basis of time perception.

We have a newsletter, virtual journal clubs, and a biennial meeting! Check us out

#academicsky

27.10.2023 17:40 — 👍 24    🔁 10    💬 0    📌 3

Then you probably do :) I very often need to work with quite small n.

12.10.2023 21:31 — 👍 0    🔁 0    💬 0    📌 0

No, I mean more observations (eg. subjects an/or trials).

12.10.2023 21:20 — 👍 0    🔁 0    💬 1    📌 0

If you treat it as category, you probably need more data. As a cont. factor eg. it can be just one linear term, for cat., it's ncats-1 terms. If you add it to rfx n of parameters further explodes. This is my hunch of what could be happening, but ofc depends on the particular error you get :)

12.10.2023 18:09 — 👍 0    🔁 0    💬 2    📌 0
Alt: An image showing two visual scenes, both indoor rooms, and also two sketches that people drew of those scenes.

Alt: An image showing two visual scenes, both indoor rooms, and also two sketches that people drew of those scenes.

New paper!   People often do not remember information they just searched for (link.springer.com/article/10.3...).
 
Subjects were asked to draw the contents of their memory immediately after searching for a target in a natural scene  Thread!

02.10.2023 17:52 — 👍 48    🔁 25    💬 2    📌 3

This needs to be reposted regularly.

25.09.2023 18:53 — 👍 1    🔁 0    💬 0    📌 0

Done, don't you donate too? 🍩🍩🍩🍩

24.09.2023 14:37 — 👍 2    🔁 0    💬 0    📌 0

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