GitHub - PacificBiosciences/pb-StarPhase: A phase-aware pharmacogenomic diplotyper for PacBio datasets
A phase-aware pharmacogenomic diplotyper for PacBio datasets - PacificBiosciences/pb-StarPhase
“StarPhase: Comprehensive Phase-Aware Pharmacogenomic Diplotyper for Long-Read Sequencing Data” is now on biorxiv! In this work, we explore the use of long-read sequencing (#PacBio #HiFi) for #pharmacogenomics #PGx. 1/N
Pre-print: doi.org/10.1101/2024...
Repo: github.com/PacificBiosc...
11.12.2024 14:30 — 👍 19 🔁 16 💬 2 📌 3
Fusion transcript plot
Checkout out a new release of pbfusion (0.5.0) for accurate detection and visualization of fusion transcripts from @pacbio.bsky.social HiFi data.
github.com/PacificBiosc...
13.12.2024 22:15 — 👍 6 🔁 2 💬 0 📌 0
Will you be sharing a stream? I'm interested but too far too attend in person.
21.02.2024 23:13 — 👍 0 🔁 0 💬 0 📌 0
It's been disappointing to see how universally and transparently even newspapers of record promote boosting the value of capital above all else.
17.01.2024 19:29 — 👍 2 🔁 0 💬 0 📌 0
Congratulations!
30.11.2023 19:45 — 👍 0 🔁 0 💬 1 📌 0
Which model? Is there a paper?
13.11.2023 17:37 — 👍 0 🔁 0 💬 1 📌 0
1/5 We (Nate Brown, @oahmed.bsky.social, Travis Gagie, and @benlangmead.bsky.social) developed Movi, a cache-efficient full-text pangenome index. It's the fastest full-text index for pangenomes, particularly appropriate for adaptive sampling where time budget is important.
07.11.2023 18:46 — 👍 12 🔁 5 💬 1 📌 0
Brett + lacto ftw
17.10.2023 16:00 — 👍 0 🔁 0 💬 0 📌 0
Ironic coming from RoseTTAFold.
10.10.2023 15:44 — 👍 1 🔁 0 💬 0 📌 0
AFDB Clusters
Good lord, the FoldSeek clustering of all AlphaFold structures is incredible. Just stunning. Vastly expands the taxonomic breadth of microbes that encode homologous structures that we care about. Paper here: www.nature.com/articles/s41... and website to search here: cluster.foldseek.com
13.09.2023 19:43 — 👍 41 🔁 13 💬 0 📌 2
Postdoctoral researcher at @anshulkundaje.bsky.social Machine learning #ML, gene regulatory networks #GRN, single cell and spatial #omics.
Previously at @saezlab.bsky.social
Core developer of https://decoupler.readthedocs.io/ at @scverse.bsky.social
Core Developer @scverse & Solutions Architect @NVIDIA
Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Assistant Professor leading the Computational Biomedicine Group at the University of Innsbruck • Data scientist at the Digital Science Center (DiSC) • Precision medicine and cancer immunotherapy • Mother 🧬🖥️
https://computationalbiomedicinegroup.github.io/
Single Cell/Spatial. Cancer Immunology. Outdoor activities.
Core developer @scverse.bsky.social.
Working in Clinical Bioinformatics at Boehringer Ingelheim.
Formerly PhD student at Medical University of Innsbruck.
My private account.
github.com/grst
Machine learning and biology. Research Scientist at Google DeepMind. adamgayoso.github.io. Views are my own.
single-cell genomics, spatial transcriptomics, T cell immunology, IBD
Computing all things single-cell | Postdoc at Genentech @MarioniLab | Steering council at scverse.org
Research software engineer at Lamin Labs | Steering council at scverse | Postdoc at Fabian Theis lab
Postdoc fellow @ Stanford & Gladstone Institutes
Core team @scverse-team.bsky.social
Bringing the single-cell genomics in human complex trait genetics
https://emdann.github.io/
Foundational tools for omics data (mostly in python).
Neuroscientist. Long-form opinions at https://markusmeister.com.
A bioinformatics postdoc at Victoria Popic's lab at Broad Institute.
Bioinformatician at the National Bioinformatics Infrastructure Sweden ( NBIS ) and SciLifeLab.
I focus on de novo genome assembly, and pipeline development. #ReproducibleResearch with #Nextflow and #Quarto.
#OpenScience
https://github.com/mahesh-panchal
Studying genomics, machine learning, and fruit. My code is like our genomes -- most of it is junk.
Assistant Professor UMass Chan
Previously IMP Vienna, Stanford Genetics, UW CSE.
@PacBio. 🧬
Views are my own.
Ph.D. student, Biostatistics, @jhubiostat.bsky.social
she/her
Website: sparthib.github.io/blog
#rstats 📈 for genomics 🧬 💻
views are my own
Bioinformatician at Viridos | Microbial Ecology | Functional and phylogenetic diversity one cell at a time
