Alexander Petri

Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler that I've been working on during my postdoc in the Heng Li lab (@lh3lh3.bsky.social).

myloasm-docs.github.io

I liked it a lot! While the initial implementation takes a bit longer than with other programming languages, debugging of the code is a lot faster

De novo clustering of large long-read transcriptome datasets with isONclust3 AbstractMotivation. Long-read sequencing techniques can sequence transcripts from end to end, greatly improving our ability to study the transcription proc

@alexanderjpetri.bsky.social's isONclust3 algorithm is now published doi.org/10.1093/bioi.... isONclust3 performs de novo clustering of long-read cDNA sequencing data. A key step in reference-free transcriptome analysis.

🚀Exciting PhD Opportunity🚀

Are you passionate about:
🧬 Graph algorithms for real-world genome sequencing?
💻 Writing efficient, reusable code & libraries?
🌲 Exploring stunning Nordic nature?

This PhD position is for YOU! 🎓✨

📅 Apply by March 2

#PhD #ComputerScience #Bioinformatics #GraphAlgorithms

I made a starter pack for algorithmic genomics. It's certainly incomplete, but already has a ton of awesome peeps. Let me know if you know people I should add (with a focus on algorithms and data structures in genomics)

go.bsky.app/TRWCnZs