Today at 16:00 CEST we're having our monthly online meeting to discuss our projects and oncoming events. Everyone is welcome to join!
If you're new to EuBIC-MS, join 15 mins earlier today for a quick tour of EuBIC-MS!
To join, go to eubic-ms.org/become-a-mem... and find the meeting URL on Slack.
28.07.2025 12:11 — 👍 1 🔁 0 💬 0 📌 0
Conference stage with Marie Locard-Paulet, the chairs, and the opening slide in the background.
Marie Locard-Paulet presenting the EuBIC-MS #ProteoBench project at the #EuPA2025 conference.
👉 Learn more about our open proteomics software benchmarking platform at proteobench.readthedocs.io.
#Proteomics #Bioinformatics #Benchmarking
19.06.2025 12:13 — 👍 19 🔁 5 💬 0 📌 1
EuBIC-MS session at EuPA 2025
Tuesday June 17, 10:15 - 12:00, Room Vauban 1
Ralf Gabriels
Introducing EuBIC-MS
10:15 - 10:30
Julian Uszkoreit
O85 - What can we gain - a comparison of common search engines and post-processing methods
10:30 - 10:45
Yannic Chen
O84 - Benchmarking Database Search Engines for DDA-based Immunopeptidomics
10:45 - 11:00
Harikrishnan Ramadasan
O86 - Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0
11:00 - 11:15
Interactive discussions on open challenges in computational proteomics
11:15 - 12:00
Join us in Saint-Malo for the #EuBIC-MS session at #EuPA2025!
After a short introduction, we have three exciting talks lined up, as well as an interactive discussion on open issues in computational proteomics.
@eupaproteomics.bsky.social @uszkoreitju.bsky.social @harirmds.bsky.social
13.06.2025 13:56 — 👍 9 🔁 4 💬 1 📌 2
And big thanks also to the @eubic-ms.org hackathon team contributing to our #SpectriPy package github.com/RforMassSpec... !
Next on the list submission of the package to 👉 @bioconductor.bsky.social
11.04.2025 10:56 — 👍 15 🔁 6 💬 0 📌 0
DDA quantification - precursor ions — ProteoBench documentation
Thanks to the incredible work of @enryh.bsky.social, now #quantms is part of #ProteoBench. You can benchmark DDA LFQ data within ProteoBench using proteomicLFQ (#OpenMS algorithm) using quantms and ProteoBench. #OpenData #OpenSource @eubic-ms.org 🔥🚀
proteobench.readthedocs.io/en/stable/av...
12.03.2025 09:38 — 👍 6 🔁 1 💬 0 📌 1
This year's Developers Meeting ended less than a month ago, but we are already looking for a location for the next one! Would you like to propose a location for the Developers Meeting in 2027?
Make your suggestion here before the 7th of March:
github.com/EuBIC/EuBIC2...
26.02.2025 09:32 — 👍 2 🔁 1 💬 0 📌 0
Group picture of all EuBIC2025 participants in front of snowy pine trees. Captioned "EuBIC-MS Developers Meeting 2025, Neustift Abbey, Italy, 2-7 February 2025, Sponsors: de.NBI, Matrix Science, and Biognosys. Powered by EuPA"
The EuBIC-MS Developers Meeting 2025 was a blast! Thanks to all participants, hackathon organizers, EuPA, and especially our sponsors: @denbi.bsky.social, @matrixscience.bsky.social, and @biognosys.bsky.social.
#EuBIC2025
24.02.2025 17:12 — 👍 13 🔁 4 💬 0 📌 0
Audience in lecture hall
Pavel Sinitcyn presenting
Katerina Nastou presenting
Will Fondrie presenting
The EUBIC-MS Developers Meeting 2025 in Brixen is off to a great start with keynotes by Pavel Sinitcyn, Katerina Nastou, and @willfondrie.com.
#EuBIC2025
03.02.2025 12:59 — 👍 23 🔁 11 💬 1 📌 0
HUPO-PSI Spring Meeting 2025 – HUPO Proteomics Standards Initiative
🚨 Big news, #TeamMassSpec! 🚨
How do we unlock proteomics data reuse, tackle metadata challenges, and harness public (clinical) data for AI?
Find out at HUPO-PSI Spring Meeting 2025!
📅 March 31 – April 3, 2025
📍 Tübingen, Germany
(1/4)
07.01.2025 15:50 — 👍 15 🔁 7 💬 1 📌 0
In hopes that I won’t get lost en route to the EuBIC-MS developers meeting in Feb, I’ve started learning Italian with Duolingo. 🇮🇹
Fantastico! Un cornetto e un caffè, per favore 🥐 ☕️
I’m super excited and I think I have the essentials learned 😂
04.12.2024 03:43 — 👍 13 🔁 1 💬 2 📌 0
Have you ever noticed how benchmarking #proteomics data analysis can be a wild west?
EuBIC-MS community members did, and started #ProteoBench: An open platform for comparing proteomics data analysis workflows.
Learn more at the webinar (27 Feb, 18h CET) Register here: bit.ly/3SfS4Lf
30.01.2024 09:28 — 👍 6 🔁 4 💬 0 📌 0
Ben, Ben, and guest Micha recording the podcast
Recording the podcast before a live audience.
Thumbnail for The Proteomics Show, Live from Winterberg
A first time for a EuBIC-MS event: The live recording of a podcast. @benneely.com and @proteomicsnews.bsky.social just recorded an episode of The Proteomics Show live from Winterberg at the #EuBIC2024 Winter School🎙️❄️
Listen now: podcasters.spotify.com/pod/show/the...
17.01.2024 16:17 — 👍 9 🔁 3 💬 1 📌 1
Not sure how much of EuBIC is actually on Bluesky, but @magnuspalmblad.bsky.social has a feed for the conference to capture the hashtag. Get it!
15.01.2024 17:52 — 👍 7 🔁 3 💬 0 📌 0
Thomas Burger presents remotely at the EuBIC-MS Winter School 2024
Cecilia Lindskog presenting at the EuBIC-MS Winter School 2024
Ben Neely presenting at the EuBIC-MS Winter School 2024
After the educational day with hands-on tutorials, day 2 of the #EuBIC2024 Winter School started with great keynotes by Thomas Burger, Cecilia Lindskog, and @benneely.com.
16.01.2024 13:15 — 👍 4 🔁 2 💬 0 📌 0
EuBIC Winter School 2024
Five days of keynotes, workshops, flash talks, posters, and more on computational mass spectrometry
15-19 January 2024 @ Winterberg, Germany
https://www.eubic-ms.org/events/2024-winter-school
Keynote speakers: Ben Neely, Cecilia Lindskog, Dirk Valkenborg, Juan Antonio Vizcaino, Laurent Gatto, Nils Hoffmann, Niveda Sundararaman, Robbin Bouwmeester, Thomas Burger, Wen-Feng Zeng
Special guest: Ben Orsburn
Sponsors: MSAID, Evosep, Matrix Science, Bioinformatics Solutions Inc
Powered by: EuPA, PROTrEIN, de.NBI
Today is the last day to:
🐦 Register with extended early bird
📃 Submit an abstract for a flash talk / poster
for the #EuBIC2024 Winter School on computational mass spectrometry.
Check out the full program on eubic-ms.org/events/2024-...
#teammassspec #proteomics #compms
01.12.2023 12:29 — 👍 2 🔁 1 💬 0 📌 1
EuBIC Winter School 2024
Five days of keynotes, workshops, flash talks, posters, and more on computational mass spectrometry
15-19 January 2024 @ Winterberg, Germany
https://www.eubic-ms.org/events/2024-winter-school
Keynote speakers: Ben Neely, Cecilia Lindskog, Dirk Valkenborg, Juan Antonio Vizcaino, Laurent Gatto, Nils Hoffmann, Niveda Sundararaman, Robbin Bouwmeester, Thomas Burger, Wen-Feng Zeng
Special guest: Ben Orsburn
Sponsors: MSAID, Evosep, Matrix Science, Bioinformatics Solutions Inc
Powered by: EuPA, PROTrEIN, de.NBI
Only four more days for early bird registration for the #EuBIC2024 Winter School ⏲️
Registration info on eubic-ms.org/events/2024-...
09.11.2023 15:14 — 👍 4 🔁 1 💬 0 📌 0
Hello there!
Bioinformatician working in Computational Proteomics.
More about me: https://michabirklbauer.me
Talus Bio is a venture-backed early-stage biotechnology startup company working on drug development for gene regulators.
Proteomic Section of the Czech Society for Biochemistry and Molecular Biology
The de.NBI network provides bioinformatics services and comprehensive compute resources to researchers in the life sciences and biomedicine in Germany and Europe. Since August 2016 the German Node of ELIXIR, ELIXIR Germany, is run by de.NBI partners.
#Bioinformatics PhD Student currently focusing on #immunopeptidomics pipeline development @nf-co.re 🧬👨💻
Doctoral researcher at Bioinformatics Research Group, FH OÖ - Hagenberg | PROTrEIN Marie-Curie early stage researcher | Computational Proteomics | Bioinformatics | Mass spectrometry | she/her
Scientist, still hanging around the UC Davis Genome Center. I guess I currently have 11 protons, because people keep telling me i'm Sodium Fine ;)
Director of Protea Glycosciences
Accelerating glycoscience research
Proteomics, humor, bbq, gravel riding, hiking, violin, gardening. Durham, NC
Focused (now) on analyzing whole 🩸 in sepsis. Pulmonary, Allergy and Critical Care Medicine, and Proteomics and Metabolomics Core Facility, Duke University
The number of people using expensive, black-box software for proteomics is bewildering.
I like big data and I cannot lie | Informatics/ML lead @ Belharra Tx, wet lab PhD @ Cravatt Lab
Farm girl turned scientist and interested in anything mass spec. Also, Associate Professor at UNC Chapel Hill.
The Official #IMSC2024, hosted by ANZSMS on behalf of TheIMSF. Melbourne, Australia - August 17-23, 2024.
www.imsc2024melbourne.com #TeamMassSpec
Data scientist @ Talus Bio.
Kind of into data, proteomics, open source and biology.
Archaeology, University of Cambridge | The Globe, University of Copenhagen
Ancient Proteins | Medieval Manuscripts | Proteomics and AI | 🇺🇦
Research Investigator at U of M. Interested in proteomics, etc. Developer of FragPipe, MSFragger, IonQuant, etc.
