Glad to have contributed to this work, and big thanks to @amathelier.bsky.social, @damlaob.bsky.social, and @ievarau.bsky.social (and the whole JASPAR crew) for this great effort.
#JASPAR #TFmotifs #DeepLearning #Genomics
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03.12.2025 14:43 β π 6 π 2 π¬ 0 π 0
JASPAR: An open-access database of transcription factor binding profiles
JASPAR is the largest open-access database of curated and non-redundant transcription factor (TF) binding profiles from six different taxonomic groups.
JASPAR 2026 is out π
The new release massively expands the TF motif collections and adds a dedicated DeepLearning collection of motifs learned from deep learning models.
Database: jaspar.elixir.no
Paper (NAR): doi.org/10.1093/nar/...
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03.12.2025 14:43 β π 61 π 28 π¬ 1 π 0
π Exciting update!
Proud to share that our team members @kkajan.bsky.social and Marta BoΕ‘njakoviΔ presented their research at the Mechanisms of Eukaryotic Transcription at Cold Spring Harbor Laboratory, Aug 26β30! #cshlmoet π€π§¬
Thank you #nextGenerationEU for the opportunity!
04.09.2025 15:29 β π 3 π 2 π¬ 0 π 1
π¦ @kkajan.bsky.social is exploring promoter usage during early avian development in #EvolCompGen. #ISMBECCB2025
24.07.2025 08:06 β π 5 π 2 π¬ 0 π 0
π Scaling CAGE analysis across tens of #DANIO-CODE samples with the @nf-co.re inspired CAGEflow pipeline βbig data meets promoters. Catch Ira's poster D-515! π¦π
24.07.2025 08:06 β π 5 π 2 π¬ 1 π 0
π¦π Building the first promoter atlas of adult zebrafish organsβexpanding #DANIO-CODE. Visit Marta at poster C-514. #zebrafish #CAGE
24.07.2025 08:06 β π 4 π 2 π¬ 1 π 0
π€ @da-bar.bsky.social is exploring AI-driven promoter architecture characterisation from CAGE! Come chat at poster D-507 at #ISMBECCB2025 @iscb-regsys.bsky.social
24.07.2025 08:06 β π 4 π 2 π¬ 1 π 0
π The CroAGE team is attending to Liverpool for #ISMBECCB2025! Catch our CAGE & promoter research posters all week at ACC Liverpool. Thank you #nextGenerationEU for the opportunityπ§΅
24.07.2025 08:06 β π 3 π 2 π¬ 1 π 0
Eagerly waiting for the start of #ISMBECCB2025 with @croage.bsky.social team, @kkajan.bsky.social, Marta and Ira, with the great company of @damlaob.bsky.social and @ferenckata.bsky.social for a keynote talk from John Jumper π§¬π¬
20.07.2025 17:33 β π 7 π 4 π¬ 0 π 0
Meet our team!
π¨βπ¬ Dr. Damir BaranaΕ‘iΔ β Project Leader @da-bar.bsky.social
π¬ Dr. Matija PiΕ‘korc β Research Associate
π©βπ¬ Dr. Katarina Kajan β Postdoc @kkajan.bsky.social
𧬠Marta BoΕ‘njakoviΔ & Ira Renko β PhD candidates
20.07.2025 10:06 β π 3 π 2 π¬ 0 π 0
Using cutting-edge technologies like CAGE (Cap Analysis of Gene Expression) and AI-driven algorithms, we aim to develop tools to explore promoter architecture & identify novel antitumor targets.
20.07.2025 10:06 β π 1 π 1 π¬ 1 π 0
CroAGE
CroAge Project, Founded by the Europe Union
π Introducing CroAGE β a #NextGenerationEU project advancing regulatory & comparative genomics in ππ· Croatia! We study gene promoters to understand how they control development & how tumours disrupt transcription.
π croage.eu/en
20.07.2025 10:06 β π 3 π 3 π¬ 1 π 0
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The Earth BioGenome Project (EBP), a moonshot for biology, aims to sequence, catalog, and characterize the genomes of all of Earth's eukaryotic biodiversity over a period of ten years.
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