We also highlighted some recent findings regarding stromal cells induced in injury and diseases. This is a rapidly developing area, and we are expecting to find more diverse biology of stromal cells in various contexts in the coming years.
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We re-annotated our previous human and mouse scRNA-seq data and picked up a few specific markers for each stromal subset. You can find more genes in the text and cited references. We also deposited re-annotated Seurat objects to Zenodo zenodo.org/records/1533...
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Despite the different annotation strategies used by different groups, the structure of scRNA-seq data is often conserved across studies. In addition, each subset is often characterized by distinct localizations. We carefully compared datasets and reviewed evidence of locations
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You did scRNA-seq of the lung, but can't decide on stromal annotation? Or trying to pick up Xenium probes? We got you! We wrote a review of stromal heterogeneity in the adult lung delineated by recent single-cell genomics studies. journals.physiology.org/doi/full/10....
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Co-founder of Grant Witness: https://grant-witness.us
Epidemiologist. Attorney. Social, legal, and environmental determinants of health.
On Signal: sdelaney.84
Research group leader and lecturer in pharmacology at King's College London: kcl.ac.uk/people/simon-cleary
Research interests: pulmonary vascular biology, immunology + developing new therapeutics and microscopy methods.
Studying genomics, transcriptomics, and all things data science in interstitial lung disease at Columbia University.
science reporter covering biomedical research at Nature | proudly Ukrainian πΊπ¦
maxkozlov.com
signal: mkozlov.01
Husband, Father and grandfather, Datahound, Dog lover, Fan of Celtic music, Former NIGMS director, Former EiC of Science magazine, Stand Up for Science advisor, Pittsburgh, PA
NIH Dashboard: https://jeremymberg.github.io/jeremyberg.github.io/index.html
Assistant Professor at Harvard MCB. T cell, Microbiome, and diet. ζ°Έε³Ά δΈζ¨Ή π―π΅πΊπΈ
Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Pulmonary/Critical Care Physician/Scientist. IPF. Single-cell/lung biology. Personal account - opinions are my own.
π« physician, clinical (evolving translational) researcher, human rights, feminism, justice, equity, humour, may all beings be happy π
Last seen laughing at own jokes (she/her)
Postdoctoral fellow at VCU. Interested in mechanobiology and cellular metabolic reprogramming in pulmonary fibrosis
Bren Professor of Computational Biology @Caltech.edu. Blog at http://liorpachter.wordpress.com. Posts represent my views, not my employer's. #methodsmatter
Scientist, clinician, cyclist, Spurs, SFGiants
#CureIPF
https://www.imperial.ac.uk/mtw-centre-fibrosing-lung-disease/
Editor-In-Chief BMJ Open Respiratory Research
We study the multiple functions of catenins in cell-cell adhesion, cytoskeleton/nuclear signaling and lung repair after injury.
Assistant Professor in Surgery, Duke University School of Medicine,
Lung π« injury and regeneration/ IPF/ Organoids/Vasculature
Physician Scientist | Nephrology | Translational Research | Single-Cell & Spatial Omics | Precision Medicine | Kidney Innovation | Advocate for Patient-Centered Science | Views My Own
physician-scientist, author, editor
https://www.scripps.edu/faculty/topol/
Ground Truths https://erictopol.substack.com
SUPER AGERS https://www.simonandschuster.com/books/Super-Agers/Eric-Topol/9781668067666
Postdoctoral fellow @MGHCancerCenter @harvardmed @broadinstitute @theNCI K99/R00,T32 fellow
Professor at the NYU School of Medicine (https://yanailab.org/). Co-founder and Director of the Night Science Institute (https://night-science.org/). Co-host of the 'Night Science Podcast' https://podcasts.apple.com/us/podcast/night-science/id1563415749
Immunologist. T cell exhaustion, immunotherapy, Immune Health.
Journal of Experimental Medicine publishes immunology, cancer, stem cells, microbial pathogenesis, vascular biology, and neurobiology research. Published by Rockefeller University Press @rupress.org
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