Daniel Guerrero-Romero

🎉 The revised version of CORNETO, our unified Python framework for knowledge-driven network inference from omics data, is published in peer reviewed form
🔗 Paper: www.nature.com/articles/s42...
📖 News & Views: www.nature.com/articles/s42...
💻 Code: corneto.org
🧵 Thread 👇

We are writing to all the Chancellorship candidates of Cambridge University asking them to commit to the creation of University Ombudsman

The Ombudsman would investigate violations of free speech, victimisation because of protected beliefs & characteristics, as well as other serious abuses

Wyn is a dedicated academic with over 20 years of teaching and service to Cambridge. Not a celebrity, billionaire, or titled figure — he is one of us. A principled scholar with deep integrity, Neil has consistently championed the interests of students and staff alike.

An enormous honour! Thank you @embo.org and @helloeacr.bsky.social!
This talk was only possible because of the amazing talent of @caldaslab.bsky.social and past #Caldasians!

Excellent last keynote presentation by @carloscaldas1960.bsky.social highlighting recent key work from the @caldaslab.bsky.social It’s a privilege to have completed my PhD in such a remarkable research lab! Excited for the forthcoming publications—stay tuned! @helloeacr.bsky.social #EACR2025

Amazing presentation delivered by @masina_riccardo @helloeacr.bsky.social ! He presented our project using PDTCs as high-throughput drug screens, and it was selected as a proffered paper! @caldaslab.bsky.social

@carloscaldas1960.bsky.social and the Caldasians will always #KeepResearchCurious and never stop doing good science!

#EACR2025
@helloeacr.bsky.social

What a great day! @helloeacr.bsky.social and Caldasians assemble ! 💪🏻🌟

snDNAseq of 40,000 cells from 140 tumors from #METABRIC. @mauriziocallari.bsky.social and @sc10021.bsky.social will soon write a major papers from this work! @caldaslab.bsky.social continues to produce outstanding science!

@allanlui.bsky.social has discovered a synthetic lethal hit for ER+ breast cancer driven by ZNF703 amplification! Major stuff! @caldaslab.bsky.social walking the walk!

The amazing @caldaslab.bsky.social is rocking #EACR2025! @helloeacr.bsky.social

🔧 decoupler 2.0.6 is out thanks to @paubadiam.bsky.social‬, now as a core @scverse.bsky.social package scverse.org

This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis 👇
decoupler.readthedocs.io/en/latest/

@helloeacr.bsky.social #EACR2025 @caldaslab.bsky.social

Nearly 25 years after we first reported these lesions in @nejm.org!

aacrjournals.org/mcr/article-...

Such a beautiful project and a pleasure to work with @nguyenlab.bsky.social ! Please share and post our recent work @cp-cellreports.bsky.social from the @caldaslab.bsky.social and Rueda Lab!

“Bluesky has won”.

Please retweet… 😉

YouTube video by Pathology Mini Tutorials Prof I O Ellis - Major Breakthroughs in Breast Cancer Prognostification Over The Past 40 years:

I would have never had the career I have had if it was not for Ian Ellis! He is in nearly all of my major papers. #METABRIC is in great part thanks to him! @caldaslab.bsky.social celebrates an amazing breast pathologist and unique colleague! Thank you, Ian!!

youtu.be/tft8ass_IZs?...

Congrats @timcoorens.bsky.social ! Beautiful work!

The somatic mutation landscape of normal gastric epithelium - Nature Whole-gene sequencing of microdissected gastric glands from individuals with and without gastric cancer reveals distinct patterns of somatic mutations and provides insights into influen...

The stomach is an organ unique in its function, environment and exposures. How does this affect the mutations that normal cells in the stomach acquire? What does this reveal about the origins of stomach cancer? These questions and more in our @nature.com paper:
www.nature.com/articles/s41...

Really nice to hear about your work there!

Proudly Caldasian! :)

The UK’s academic recession is in full swing This university crisis is a grim scrabble for numbers

Where are our leaders?

www.ft.com/content/0ec7...

The human and non-human primate developmental GTEx projects - Nature The developmental Genotype-Tissue Expression (dGTEx) projects will catalogue and integrate gene expression, regulation and genetics data across 120 human donors from birth to adulthood with developmen...

Our new perspective article describing the human and non-human primate developmental GTEx projects is now out in
@nature.com! We outline the scope, vision, opportunities and challenges of these projects here:
www.nature.com/articles/s41...

🤡🤡🤡

See you next week! We will host very exciting speakers! Don’t miss it!

I am proud to be giving a keynote lecture at #EACR2025! I am very grateful to be presenting some of the seminal work done by the truly amazing @caldaslab.bsky.social, including unpublished work and our future scientific plans focusing on tumor ecosystems.

Congratulations Dr Daniel Guerrero-Romero!! It is fantastic to see another PhD out of @caldaslab.bsky.social! This one on the mathematics of breast cancer xenograft growth.

I feel very privilege not only for accomplished this but also for having the opportunity to learn and meet new people with wonderful backgrounds! Thanks for everything all of you! 🙏

And obviously the amazing Florian Markowetz for hosting me into his lab and let me being part of his group!

Of course all this could have not been possible without the supervision of Oscar M Rueda and @carloscaldas1960.bsky.social ! So thank you again for giving me the opportunity to do a PhD with both of you!