We are very pleased to welcome our new CTO, @andrewjpage.bsky.social, to the team.
Having held a number of senior positions, authored >150 scientific publications and led development of widely used tools, Prof. Page brings a wealth of experience to the role and we look forward to working together!
14.05.2025 13:06 — 👍 5 🔁 3 💬 2 📌 0
YouTube video by The Bioinformatics Lab
Pathogen Genomics in Healthcare with Alex Sundermann
@sundermannaj.bsky.social's work highlights the undeniable impacts of pathogen genomics in healthcare. But pathogen genomics in healthcare remains the exception, not the norm.
We spent an hour exploring the challenges and potential solutions to more broad adoption.
www.youtube.com/watch?v=XDLo...
14.05.2025 20:10 — 👍 5 🔁 3 💬 0 📌 0
GitHub - rrwick/condaenvlist: a simple tool for listing conda environments with descriptions
a simple tool for listing conda environments with descriptions - rrwick/condaenvlist
Do you (like me) create a bunch of conda environments, then later forget what they're for, when they were last updated, or which tools are in them?
If so, you might this little project: github.com/rrwick/conda...
27.03.2025 04:34 — 👍 78 🔁 40 💬 1 📌 1
Dan Evans has given me a skill tree (with classes) for genomic epi. Now I want to create one for bioinformaticians. #IDLabCon
24.03.2025 19:23 — 👍 9 🔁 2 💬 3 📌 0
YouTube video by The Bioinformatics Lab
The Kalamari Databse
Huge shout out to @lskatz.bsky.social et al on the recent Micro Resource Announcement for Kalamari!
@andrewjpage.bsky.social and I highlight Kalamari's utility in pathogen genomics: www.youtube.com/watch?v=KDzY...
Paper here: journals.asm.org/doi/epub/10....
& Github: github.com/lskatz/Kalam...
04.02.2025 15:32 — 👍 6 🔁 3 💬 0 📌 0
Ep. 46: The Job Hunt Experience pt. 01
Summary
In this episode, Kevin Libuit and Andrew Page discuss their personal experiences with job hunting in the bioinformatics field, emphasizing the importance of professional networks and genuine
I co-host The Bioinformatics Lab podcast with @kevinlibuit.bsky.social and the other day we had a great chat about our job hunting experiences, the importance of professional networks and making genuine connections. Its on all the podcasting apps & youtube soundcloud.com/the_bioinfor...
14.01.2025 11:33 — 👍 9 🔁 4 💬 0 📌 0
Had a lovely sunrise run with @kevinlibuit.bsky.social in Berkeley, stunning campus
20.01.2025 15:53 — 👍 4 🔁 1 💬 0 📌 0
WHO estimates 600 million cases of foodborne diseases and 420,000 deaths annually.
On the #BioinformaticsLabPodcast, @andrewjpage.bsky.social and I discuss the public health challenges to ensure food safety.
Watch: youtu.be/ZP8upimRROk
Listen: on.soundcloud.com/3FF7r
20.12.2023 14:12 — 👍 3 🔁 0 💬 0 📌 0
Hello #binfie world!
20.10.2023 14:18 — 👍 5 🔁 1 💬 0 📌 0
For the first time ever @kevinlibuit.bsky.social and I meet up in person to record a podcast and discuss what happened at The Global Microbial Identifier Conference in Vancouver, Canada. S
Podcast: soundcloud.com/the_bioinfor...
Video: youtu.be/h9Fxv919HQw
05.10.2023 14:58 — 👍 2 🔁 2 💬 0 📌 0
Public health (meta)genomics & bioinformatics, Prof @unibirmingham.bsky.social, Director @imibirmingham.bsky.social & @climb.ac.uk
Scientist… pathogen genomics & antimicrobial resistance, computational biology & infectious disease epidemiology.
Co-Director LSHTM AMR Centre @lshtmamrcentre.bsky.social
holtlab.net | klebnet.org | typhoidgenomics.org | amr.lshtm.ac.uk
Head of the School of Infection, Inflammation & Immunology @ Uni Birmingham. Proud Scot. Oversaw a few Covid PCR tests
Prof @cambridgebiosci.bsky.social Connecting pathogen evolution with public health outcomes. #Shigella and #AMR enthusiast. Views own. http://gen.cam.ac.uk/baker-group also www.pdu.gen.cam.ac.uk also @pducambridge.bsky.social
Microbiologist @ Vet School, genomics/pathogens. Views, compliments and rants are my own. ORCID: 0000-0003-0203-1305. Am trying to avoid getting politics in my mentions, science and cats OK!
UKRI Future Leaders Fellow, University of Birmingham
Co host of the Micro Binfie podcast
Microbiology PhD, co-author of antiSMASH, Open Source geek, views are my own. @kblin@scholar.social
Virus evolution, bioinformatics & phylogenetics. Researcher at University of Edinburgh.
Senior Program Officer in the Genomic Epidemiology and Modelling team at The Bill & Melinda Gates Foundation. Pathogen genomics and bioinformatics.
Pathogen informatics and modelling http://bacpop.org
(Research group leader at EMBL-EBI - http://ebi.ac.uk/research/lees/)
Researching WGS/Epi/Taxonomy of pathogenic mycobacteria and evo of microbiomes. Irish-born, Nottingham-working. Call me Conchúr if you can pronounce it. He/They
https://www.ntu.ac.uk/staff-profiles/science-technology/conor-meehan
Epidemiology, microbial (meta)genomics, antimicrobial resistance, One Health, Professor of Microbial Genomic Epidemiology at Quadram Institute Bioscience & University of East Anglia.
Genomic epidemiologist at the Centre for Genomic Pathogen Surveillance at Oxford. How can microbial genomics improve health in high infectious disease settings?
ENA Project Lead & Product Owner @ebi.embl.org | Bioinformatics services and infrastructure | @enasequence.bsky.social
Bioinformatician in the Department of Biology, University of Oxford.
Working on microbial genomics | Developer of @PubMLST.org and BIGSdb | https://orcid.org/0000-0002-0751-0287
Public health genomics and big computers working in Wales. Parent of two small children. Gamer, foodie, geek. Also likes cats. Views my own.
Associate Professor at Utrecht University, Infectious Diseases & Immunology. (meta)genomes, AMR, zoonotic pathogens. Cookie and cake connoisseur.
publications: https://scholar.google.com/citations?hl=nl&user=VHHhpoAAAAAJ&view_op=list_works&sortby=pubdate
Fighting mental health stigma and toxic research culture. Proud to support https://twloha.com/.
And when life gives you lemons, make a G&T.
She/Her
Professor of Microbiology @uniofeastanglia and Group Leader @TheQuadram, Norwich, UK - genomics, AMR, host-pathogen interactions, phage, microbiome
Editor Communications Biology
