and better colors:
set_color nitrogen = [2, 118, 253]
set_color good_red, [228,74,62]
set_color good_yellow, [250,199,44]
set_color good_teal, [40,176,193]
set_color good_green, [170,195,47]
set_color good_pink, [236,114,164]
set_color good_peach, [249,145,120]
set_color good_blue, [68,153,231]
27.04.2025 18:26 โ ๐ 1 ๐ 0 ๐ฌ 0 ๐ 0
some other stuff for structures:
# Structure preferences
set ribbon_width, 8
set line_width, 2.5
set cartoon_transparency, 0.45
set cartoon_flat_sheets, off
set valence, off
set dash_length, 0.06
set dash_radius, 0.12
set cartoon_gap_cutoff, 0
27.04.2025 18:24 โ ๐ 2 ๐ 0 ๐ฌ 1 ๐ 0
this is what we use:
set specular, 0
set ray_shadow, off
set antialias, 2
set ray_trace_mode, 1
set ray_trace_disco_factor, 1
set ray_trace_gain, 0.1
set ambient, 0.4
set direct, 0.45
set cartoon_sampling, 10
set ray_trace_color, black
set reflect, 1
set reflect_power, 0
27.04.2025 18:23 โ ๐ 14 ๐ 1 ๐ฌ 1 ๐ 1
Senior lecturer in Computational Biophysics @ University of Edinburgh molecular simulations, machine learning and baking enthusiasts. Occasional mathematics outreach
Core Investigator @ Arc Institute | Associate Professor @ UCSF | {Computational, Systems, Cancer, RNA} biologist | Co-founder @exaibio @vevo_ai
Assistant Professor at UC Berkeley and UCSF.
Machine Learning and AI for Healthcare. https://alaalab.berkeley.edu/
PhD student University College London: machine learning for protein design and structure-based drug discovery
PhD candidate at MIT CSAIL. Generative models, protein design.
Ex: DeepMind, Microsoft, Instagram, Johns Hopkins University.
Website: https://people.csail.mit.edu/jyim/
X: https://x.com/json_yim
PhD student @EPFL ๐จ๐ญ
ML & computational biology ๐ค๐งฌโ๏ธ
Professor in bioinformatics, Stockholm University. Protein structure lover ( interactions predictions, evolution ..). Using machine learning as a part of AI for Sciences for halv my life. In addition to succรฉn, I sometimes rants about sailing or skiing.
Computational biophysicist, et al. Opinions expressed are my own.
Also @giorginolab@mstdn.science on Mastodon, bridged here @giorginolab.mstdn.science.ap.brid.gy .
Systems immunologist at Yale, @yalecsei.bsky.socialโฌ, @czbiohub.bsky.socialโฌ
Me: https://medicine.yale.edu/profile/john-tsang/
Lab: https://www.tsanglab.org
Center: https://medicine.yale.edu/systems-engineering-immunology/
Science is the best use of ML
PhD Student @CMUPittCompBio.bsky.social / @SCSatCMU.bsky.social
Interested in ML for science/Compuational drug discovery/AI-assisted scientific discovery ๐ค
from ๐ฑ๐ฐ๐ซถ https://ramith.fyi
Senior Chemรธinformatician at Merck | Postdoc@Broad Institute of MIT and Harvard, Cambridge(MA) | PhD@University of Cambridge(UK) | AI, Image Analysis, bioML, -omics data, and Cell Painting for drug discovery. srijitseal.com/tools
Data Scientist Generative AI @BayerCropScience. ML for Plant Biology. PhD @IowaStateUniversity https://www.linkedin.com/in/koushik-nagasubramanian/
RNA, Evolutionary Biology, Machine Learning, and ancient history.
Building evolutionary ML models.
Cambridge, UK
Working in functional genomics, machine learning, and single-cell with a focus on multi-perturbation modeling.
PhD Candidate in labs of Hani Goodarzi and Luke Gilbert @ UCSF and Arc Institute
Comp Bio and ML at Tahoe Therapeutics (formerly Vevo)
Removing barriers to computational drug discovery one bit at a time. Associate Professor in Computational and Systems Biology at the University of Pittsburgh.
https://bits.csb.pitt.edu/
Biophysicist๏ฝDamon Runyon QB & NCI Early Stage K99/R00 Fellow at MSKCC w/ @jchodera.bsky.social | @foldingathome.org | PhD with @drgregbowman.bsky.social | Variant Effects, Protein dynamics, Dogs, Games ๐ฎ๐ณ๐ธ๐ฌ๐บ๐ธ
My website: https://sukritsingh.github.io
๐งช Head of Computational Biology at Protera, based in Paris ๐ฅ
PhD AI for Drug Discovery @QMUL, @EPFL, @MSDintheUK. ex-{@TUDelft, @CureVacRNA}. Researching the intersection of AI and biology to improve human health. ๐งฌ๐ค