Plenary talk
Lennart Martens
Rise of the Robots โ definitely artificial, somewhat intelligent
Keynote lecture
Tim Van Den Bossche
Improving metaproteomics data analysis with the Ghent Metaproteomics Toolbox
Oral presentations
Harikrishnan Ramadasan
Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0
Robbe Devreese
Collisional cross-section prediction for peptides and small molecules: covering all bases (and bridging the gap?)
Robbin Bouwmeester
Challenges and opportunities in modification searches for DIA proteomics
Educational session
Lennart Martens
No more surprises: AI predictions in MS DDA and DIA data interpretation
Robbin Bouwmeester
A deep dive into limitations of modification searching for DIA data
Caroline Jachmann
Fantastic PTMs and how (not?) to find them using msqrob2PTM -
a real-life journey
Poster presentations
Enrico Massignani
Overcoming challenges in non-canonical protein searches with OpenProt and ionbot
Pathmanaban Ramasamy
Assessing the relation between protein phosphorylation, AlphaFold3 models and conformational variability
Toon Callens
Advancing tissue prediction using read-based DNA methylation modelling towards a multi-omics integration
Tine Claeys
MLMarker: Data-driven discovery of tissue similarity and biomarkers
Alireza Nameni
Enhancing peptide-spectrum match identification with non-linear models in Mokapot: Assessing complexity, overfitting, and false discovery rates
Tim Van Den Bossche
The Metaproteomics Initiative: An international community by and for metaproteomics researchers
Award presentations
Tine Claeys
Bioinformatics Award
Tim Van Den Bossche
Vision & Commitment Award
From PTMs to proteins, from metadata to metaproteomics. CompOmics has got you covered at #EuPA2025!
16.06.2025 08:05 โ ๐ 22 ๐ 8 ๐ฌ 0 ๐ 0
PTMVision
PTMVision: Interactive Visualization of Post Translational Modifications | Understanding the intricate landscape of post-translational
modifications (PTMs) is crucial for unraveling the co...
Do you want to explore the PTMs you identified in your last MS experiment in a fun, interactive way? Try it out on our PTMVision web server at ptmvision-tuevis.cs.uni-tuebingen.de and check out the new publication in JPR at doi.org/10.1021/acs....!
21.01.2025 16:02 โ ๐ 10 ๐ 7 ๐ฌ 0 ๐ 0
HUPO-PSI Spring Meeting 2025 โ HUPO Proteomics Standards Initiative
๐จ Big news, #TeamMassSpec! ๐จ
How do we unlock proteomics data reuse, tackle metadata challenges, and harness public (clinical) data for AI?
Find out at HUPO-PSI Spring Meeting 2025!
๐
March 31 โ April 3, 2025
๐ Tรผbingen, Germany
(1/4)
07.01.2025 15:50 โ ๐ 15 ๐ 7 ๐ฌ 1 ๐ 0
Caroline Jachmann presenting her work in front of the BePAc 2024 audience
Robbe Devreese presenting his work at BePAc 2024
Today, @robbedevr.bsky.social and @carojachmann.bsky.social presented their work on #IM2Deep and #ProteoBench at #BePAc2024.
Learn more at doi.org/10.1101/2024... and proteobench.readthedocs.io.
06.12.2024 14:52 โ ๐ 8 ๐ 3 ๐ฌ 0 ๐ 0
Group Leader and Adjunct Professor ๐งโ๐ซ | Public Health | Data Engineering & Visualization | ๐งฌ Bioinformatics & ๐ Mass Spec Enthusiast | ๐ Berlin | Passionate About Collaboration and Open Science ๐ฌโจ
PostDoc in Olsen Group and Arachnid wll-being executive manager. ๐ท๏ธ๐ธ๏ธ Working on Spatial Proteomics and extracellular vesicles. ๐ค
Staff Research Engineer in BioAI at InstaDeep (part of @biontech.bsky.social)- machine learning for personalized cancer vaccines, de novo peptide sequencing and signal peptides.
From Belgium ๐ง๐ช currently living in Cape Town ๐ฟ๐ฆ
#bioML #TeamMassSpec
Group leader at PTB Braunschweig and professor at TU Braunschweig working in computational proteomics and metabolomics
computational mass spectrometry https://fgcz.ch | proteomics | maps | Open Source Code https://github.com/cpanse | Europรคer | 47N 008E
PhD_ing at Uni Freiburg #Mass_spec :)
Trying to understand proteolysis in Kidney health / GRK2606-Protpath
Computer scientist and tennis player
Co-funded by the European Union and the Hungarian National Research, Development and Innovation Fund.
Views and opinions expressed are those of the author(s).
Ph.D. atmospheric scientist๐, nuclear engineerโข, ๐ฐ #antarctica
South Pole Station ๐ง http://amzn.to/2klpv3b ๐ง
PostDoc researcher @ UniBasel | Chemist ๐จโ๐ฌ| Portable Analytical Devices ๐ฌ๐ | Located in Switzerland ๐จ๐ญ | Made in Italy ๐ฎ๐น | โ๏ธ๐โฐ๏ธ๐งโโ๏ธ
mass spectrometry, R, data analysis, proteomics, metabolomics
#teammassspec
open and reproducible science
postdoc at SCI MUNI (CZ)
climbing, hiking, swing dancing!
Proteomics Identification Database (https://www.ebi.ac.uk/pride/)
Epigenetic Inheritance, Neuroscience & anything biology-related
https://www.odedrechavilab.com/
https://www.qedscience.com
Organizer of โThe Woodstock of Biologyโ
TED: https://shorturl.at/myFTY
Huberman Lab Podcast: https://youtu.be/CDUetQMKM6g
European Bioinformatics Community for Mass Spectrometry
@eupaproteomics.bsky.social initiative
#massspec #proteomics #metabolomics
Scientist, still hanging around the UC Davis Genome Center. I guess I currently have 11 protons, because people keep telling me i'm Sodium Fine ;)
Director of Protea Glycosciences
Accelerating glycoscience research
Proteomics, humor, bbq, gravel riding, hiking, violin, gardening. Durham, NC
Focused (now) on analyzing whole ๐ฉธ in sepsis. Pulmonary, Allergy and Critical Care Medicine, and Proteomics and Metabolomics Core Facility, Duke University
The number of people using expensive, black-box software for proteomics is bewildering.