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Caroline Jachmann

@carojachmann.bsky.social

Predoctoral researcher at CompOmics Gent

56 Followers  |  85 Following  |  1 Posts  |  Joined: 05.12.2024  |  1.4103

Latest posts by carojachmann.bsky.social on Bluesky

Plenary talk

Lennart Martens
Rise of the Robots โ€“ definitely artificial, somewhat intelligent


Keynote lecture

Tim Van Den Bossche
Improving metaproteomics data analysis with the Ghent Metaproteomics Toolbox


Oral presentations

Harikrishnan Ramadasan
Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0

Robbe Devreese
Collisional cross-section prediction for peptides and small molecules: covering all bases (and bridging the gap?)

Robbin Bouwmeester
Challenges and opportunities in modification searches for DIA proteomics


Educational session

Lennart Martens
No more surprises: AI predictions in MS DDA and DIA data interpretation

Robbin Bouwmeester
A deep dive into limitations of modification searching for DIA data

Caroline Jachmann
Fantastic PTMs and how (not?) to find them using msqrob2PTM -
a real-life journey


Poster presentations

Enrico Massignani
Overcoming challenges in non-canonical protein searches with OpenProt and ionbot

Pathmanaban Ramasamy
Assessing the relation between protein phosphorylation, AlphaFold3 models and conformational variability

Toon Callens
Advancing tissue prediction using read-based DNA methylation modelling towards a multi-omics integration

Tine Claeys
MLMarker: Data-driven discovery of tissue similarity and biomarkers

Alireza Nameni
Enhancing peptide-spectrum match identification with non-linear models in Mokapot: Assessing complexity, overfitting, and false discovery rates

Tim Van Den Bossche
The Metaproteomics Initiative: An international community by and for metaproteomics researchers


Award presentations

Tine Claeys
Bioinformatics Award

Tim Van Den Bossche
Vision & Commitment Award

Plenary talk Lennart Martens Rise of the Robots โ€“ definitely artificial, somewhat intelligent Keynote lecture Tim Van Den Bossche Improving metaproteomics data analysis with the Ghent Metaproteomics Toolbox Oral presentations Harikrishnan Ramadasan Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0 Robbe Devreese Collisional cross-section prediction for peptides and small molecules: covering all bases (and bridging the gap?) Robbin Bouwmeester Challenges and opportunities in modification searches for DIA proteomics Educational session Lennart Martens No more surprises: AI predictions in MS DDA and DIA data interpretation Robbin Bouwmeester A deep dive into limitations of modification searching for DIA data Caroline Jachmann Fantastic PTMs and how (not?) to find them using msqrob2PTM - a real-life journey Poster presentations Enrico Massignani Overcoming challenges in non-canonical protein searches with OpenProt and ionbot Pathmanaban Ramasamy Assessing the relation between protein phosphorylation, AlphaFold3 models and conformational variability Toon Callens Advancing tissue prediction using read-based DNA methylation modelling towards a multi-omics integration Tine Claeys MLMarker: Data-driven discovery of tissue similarity and biomarkers Alireza Nameni Enhancing peptide-spectrum match identification with non-linear models in Mokapot: Assessing complexity, overfitting, and false discovery rates Tim Van Den Bossche The Metaproteomics Initiative: An international community by and for metaproteomics researchers Award presentations Tine Claeys Bioinformatics Award Tim Van Den Bossche Vision & Commitment Award

From PTMs to proteins, from metadata to metaproteomics. CompOmics has got you covered at #EuPA2025!

16.06.2025 08:05 โ€” ๐Ÿ‘ 22    ๐Ÿ” 8    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Collisional cross-section prediction for multiconformational peptide ions with IM2Deep Peptide collisional cross-section (CCS) prediction is complicated by the tendency of peptide ions to exhibit multiple conformations in the gas phase. This adds further complexity to downstream analysi...

๐Ÿš€ New preprint alert! We've improved IM2Deep for accurate peptide collisional cross-section (CCS) prediction, even for peptides exhibiting multiple conformations in the gas phase! ๐ŸŽฏ

Check it out here:

www.biorxiv.org/content/10.1...

23.02.2025 13:12 โ€” ๐Ÿ‘ 15    ๐Ÿ” 10    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
PTMVision PTMVision: Interactive Visualization of Post Translational Modifications | Understanding the intricate landscape of post-translational modifications (PTMs) is crucial for unraveling the co...

Do you want to explore the PTMs you identified in your last MS experiment in a fun, interactive way? Try it out on our PTMVision web server at ptmvision-tuevis.cs.uni-tuebingen.de and check out the new publication in JPR at doi.org/10.1021/acs....!

21.01.2025 16:02 โ€” ๐Ÿ‘ 10    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
HUPO-PSI Spring Meeting 2025 โ€“ HUPO Proteomics Standards Initiative

๐Ÿšจ Big news, #TeamMassSpec! ๐Ÿšจ
How do we unlock proteomics data reuse, tackle metadata challenges, and harness public (clinical) data for AI?
Find out at HUPO-PSI Spring Meeting 2025!

๐Ÿ“… March 31 โ€“ April 3, 2025
๐Ÿ“ Tรผbingen, Germany
(1/4)

07.01.2025 15:50 โ€” ๐Ÿ‘ 15    ๐Ÿ” 7    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Caroline Jachmann presenting her work in front of the BePAc 2024 audience

Caroline Jachmann presenting her work in front of the BePAc 2024 audience

Robbe Devreese presenting his work at BePAc 2024

Robbe Devreese presenting his work at BePAc 2024

Today, @robbedevr.bsky.social and @carojachmann.bsky.social presented their work on #IM2Deep and #ProteoBench at #BePAc2024.

Learn more at doi.org/10.1101/2024... and proteobench.readthedocs.io.

06.12.2024 14:52 โ€” ๐Ÿ‘ 8    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

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