Miguel Ramalho-Santos's Avatar

Miguel Ramalho-Santos

@mrsantos.bsky.social

Scientist and Professor in Developmental Epigenetics. Lunenfeld-Tanenbaum Research Institute Dpt Molecular Genetics, University of Toronto, Canada Lab: mrsantoslab.org Coimbra, Portugal -> Cambridge, MA, USA -> S. Francisco, CA, USA -> Toronto, ON, Canada

462 Followers  |  158 Following  |  47 Posts  |  Joined: 11.07.2023  |  2.0116

Latest posts by mrsantos.bsky.social on Bluesky

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Trick or Treat! πŸ‘»πŸŽƒ

10.11.2025 19:23 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Single-cell nascent transcription reveals sparse genome usage and plasticity scFLUENT-seq is a single-cell method that sensitively captures nascent nuclear transcriptomes to reveal mRNA and ncRNA dynamics, heterogeneity across chromatin compartments, and transcriptional divers...

Also noted: Single-cell nascent transcription reveals sparse genome usage and plasticity www.cell.com/cell/abstrac...

22.10.2025 14:03 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Mechano-osmotic signals control chromatin state and fate transitions in pluripotent stem cells Acquisition of specific cell shapes and morphologies is a central component of cell fate transitions. Although signaling circuits and gene regulatory networks that regulate pluripotent stem cell diffe...

Discussed @mrsantos.bsky.social lit review: Mechano-osmotic signals control chromatin state and fate transitions in pluripotent stem cells. www.biorxiv.org/content/10.1...

22.10.2025 14:03 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
Post image 21.10.2025 03:46 β€” πŸ‘ 6    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Maternal stress triggers early-life eczema through fetal mast cell programming - Nature Prenatal stress triggers molecular dysregulations in fetal neuroimmune circuits, leading to altered mast cell and sensory neuron function, which predisposes offspring to develop eczema in response to ...

Also noted: Maternal stress triggers early-life eczema through fetal mast cell programming. www.nature.com/articles/s41...

15.10.2025 14:23 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Preventing CpG hypermethylation in oocytes safeguards mouse development Kawamura et al. show that H3K36me2 removal by the KDM2A and KDM2B histone demethylases restricts DNMT3A in establishing global DNA methylation in oocytes. Maternal Kdm2a/Kdm2b knockout embryos die dur...

Discussed @mrsantos.bsky.social lit review: Preventing CpG hypermethylation in oocytes safeguards mouse development. www.cell.com/developmenta...

15.10.2025 14:23 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

(4/4) Our findings redefine the role of TGF-Ξ² signaling in early development and suggest conserved parallels between embryonic diapause, stem cell quiescence, and cancer dormancy.

09.10.2025 20:08 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

(3/4) Mechanistically, Smad2 represses the metabolic regulator Pparg, preventing lipid accumulation that is incompatible with dormancy. This links signaling, metabolism, and chromatin control during developmental pausing.

09.10.2025 20:08 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Nodal/Smad2 signaling sustains developmental pausing by repressing Pparg-mediated lipid metabolism Cells and organisms can enter transient dormant states to survive unfavorable conditions during development, physiological adult contexts, and disease. One paradigmatic case of dormancy is diapause, w...

(2/4) We discovered that Nodal/Smad2 signaling, a branch of the TGF-Ξ² pathway, is essential to sustain this paused state in embryonic stem cells and embryos. www.biorxiv.org/content/10.1...

09.10.2025 20:08 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
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(1/4) New Pre-print! 🌟
Embryonic development is usually seen as a continuous process, yet some embryos can pause their development to survive harsh conditions, a phenomenon known as diapause. How this pausing is actively maintained has remained a mystery.

09.10.2025 20:08 β€” πŸ‘ 10    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
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2026 Election Nominations β€” International Society for Stem Cell Research Elections and nominations for the International Society for Stem Cell Research board of directors and officers.

The ISSCR is seeking nominations for Vice President and three Director positions. This is an opportunity to help shape the future of stem cell research and contribute to a global scientific community. Nominations are due 22 October 2025. Learn more πŸ‘‰ https://www.isscr.org/nominations

08.10.2025 16:01 β€” πŸ‘ 0    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

John Gurdon was a true giant:
- founder of cell reprogramming;
- founder of molecular embryology;
- unabashed advocate for basic research;
- advisor to numerous successful trainees/PIs;
- gentle human that touched so many.
In dark times with science under attack, let his vision be a guiding light.

07.10.2025 19:57 β€” πŸ‘ 49    πŸ” 11    πŸ’¬ 1    πŸ“Œ 0

🚨 JOB ALERT 🚨
We are hiring TWO principal investigators in systems, cellular, chemical or molecular biology in Toronto, Canada at
@sinaihealth.bsky.social. We provide a generous startup, fully funded salary and academic appointment at U of Toronto.

Apply now or repost!

24.09.2025 16:05 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Thank you for this honor and the continued trust in our group's research! We hope that our work will honor the memory and legacy of Anne and Max Tanenbaum. It is truly a privilege to be part of the amazing communities of @uoftmedicine.bsky.social and @sinaihealth.bsky.social.

09.09.2025 17:06 β€” πŸ‘ 10    πŸ” 2    πŸ’¬ 2    πŸ“Œ 0

(4/4) These findings provide new insights on the chromatin-level regulation of MYC-driven breast cancer and uncover CHD1 as a novel synthetic lethal vulnerability and potential therapeutic target.

04.09.2025 19:11 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

(3/4) We found that CHD1 is required to maintain an open chromatin landscape and a transcriptional program associated with cancer progression in MYC overexpressing breast cells and that this synthetic lethality may arise from nucleolar stress and p53 activation.

04.09.2025 19:11 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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(2/4) We found that knockdown of CHD1 in a xenograft model of MYC-driven breast cancer suppresses tumor growth in vivo. In tissue culture models, knockdown of CHD1 suppresses cell proliferation and induces cell death, specifically when MYC is overexpressed.

04.09.2025 19:11 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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CHD1 is a synthetic lethal vulnerability in MYC-driven breast cancer The MYC transcription factor is a key regulator of growth during development and a potent cancer driver when its expression is dysregulated. Strategies to inhibit MYC oncogenic activity would mark a s...

(1/4) New preprint from the lab!
The MYC transcription factor is a potent cancer driver when its expression is dysregulated, but efforts to target MYC directly have not been fruitful. We identify CHD1 as a synthetic lethal vulnerability in MYC-driven breast cancer. www.biorxiv.org/content/10.1...

04.09.2025 19:11 β€” πŸ‘ 7    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
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Pluripotency factor Tex10 finetunes Wnt signaling for spermatogenesis and primordial germ cell development - Nature Communications Here they identify Tex10 as a critical regulator of male fertility and germ cell development. By fine-tuning Wnt signaling, Tex10 promotes spermatogenesis and PGC differentiation, offering potential t...

Also noted:
Pluripotency factor Tex10 finetunes Wnt signaling for spermatogenesis and primordial germ cell development. www.nature.com/articles/s41...

12.08.2025 14:41 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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A single-cell time-lapse ofΒ mouse prenatal development from gastrula to birth - Nature Single-cell transcriptome profiling of mouse embryos and newborn pups is combined with previously published data to construct a tree of cell-type relationships tracing development from zygote to birth...

β€ͺDiscussed @mrsantos.bsky.social lit review: A single-cell time-lapse of mouse prenatal development from gastrula to birth.
www.nature.com/articles/s41...

12.08.2025 14:41 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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🌞 Let's enjoy the summer time in Toronto! πŸ–οΈ

25.07.2025 15:17 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Nucleosome organization of mouse embryos during pre-implantation development - Scientific Reports Scientific Reports - Nucleosome organization of mouse embryos during pre-implantation development

Also noted:
Nucleosome organization of mouse embryos during pre-implantation development.
www.nature.com/articles/s41...

22.07.2025 16:34 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Recovering undersampled single-cell transcriptomes with HyperCell Single-cell transcriptomic technology has now matured, allowing quantification of mRNA transcripts corresponding to tens of thousands of genes within a cell. However, still only a small fraction of th...

Discussed @mrsantos.bsky.social lit review:
Recovering undersampled single-cell transcriptomes with HyperCell.
www.researchsquare.com/article/rs-6...

22.07.2025 16:34 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

(3/3) We show that alpha satellite RNA is required for maintenance of the perinuclear compartment and for maintaining a low transcriptional output, including of ribosomal RNA, in human embryonic stem cells.

21.07.2025 20:12 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

(2/3) We found that alpha satellite RNA is highly chromatin-bound and localizes to the perinuclear compartment, a domain of the nucleus previously only thought to exist in cancer cells.

21.07.2025 20:12 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Alpha satellite RNA marks the perinucleolar compartment and represses ribosomal RNA expression in naΓ―ve human embryonic stem cells While most newly synthesized RNA is exported to the cytoplasm, a portion of non-coding RNA is retained in the nucleus and remains highly associated with chromatin. The strong binding of this RNA fract...

(1/3) Latest preprint from the lab! πŸ“
This work points towards regulatory roles of alpha satellite RNA in nuclear compartmentalization and tuning ribosomal RNA expression in naΓ―ve human embryonic stem cells.
doi.org/10.1101/2025...

21.07.2025 20:12 β€” πŸ‘ 5    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

⏳Only 1 week left to submit your talk for the Fusion Stem Cells & Cancer Conference!
πŸ§ͺShare your exciting discoveries with us!!
πŸ“Malta
πŸ—“οΈTalk Deadline: July 10
πŸ”—http://bit.ly/49sCfJp
@joneslabucsf.bsky.social, Kathrin Plath, @katemiro.bsky.social at @fusionconf.bsky.social

04.07.2025 08:21 β€” πŸ‘ 4    πŸ” 5    πŸ’¬ 0    πŸ“Œ 1
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DNA methylation mediates the link between adversity and depressive symptoms - Nature Mental Health Using epigenome-wide mediation analyses to investigate DNA methylation as a path between adversity and depression, the authors found 31 cytosine–guanine dinucleotides (CpGs) associated with risk and 3...

Also noted:
DNA methylation mediates the link between adversity and depressive symptoms
www.nature.com/articles/s44...

17.06.2025 16:14 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Maternal iron deficiency causes male-to-female sex reversal in mouse embryos - Nature Iron-deficient conditions in pregnant mice can cause XY mouse embryos to develop female rather than male genitalia, revealing that iron metabolism has a role in determining male sex in mice.

β€ͺDiscussed @mrsantos.bsky.social lit review: Maternal iron deficiency causes male-to-female sex reversal in mouse embryos
www.nature.com/articles/s41...

17.06.2025 16:14 β€” πŸ‘ 9    πŸ” 2    πŸ’¬ 1    πŸ“Œ 2
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Congrats to Dr. Cho on the successful PhD defense!

12.06.2025 14:05 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

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