's Avatar

@jacobtref.bsky.social

blog.jacobtrefethen.com

1,895 Followers  |  143 Following  |  67 Posts  |  Joined: 02.05.2023  |  2.2305

Latest posts by jacobtref.bsky.social on Bluesky

Cool episode on how AI can help us design new proteins (e.g., for vaccines).

Iโ€™d heard of AlphaFold before, but not of ProteinMPNN. You feed a protein structure into PMPNN & generate possible sequences of amino acids. And then you feed those into AlphaFold to check whether theyโ€™d fold up that way!

02.10.2025 06:27 โ€” ๐Ÿ‘ 26    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

me too!

01.10.2025 18:56 โ€” ๐Ÿ‘ 4    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Hearing a lot about AI designing drugs, but not sure what specifically that means?

Ever wonder how AlphaFold works, or what practical problems it helps with?

How rattan daybeds can hold their own in a modern home?

This episode is for you!

01.10.2025 17:34 โ€” ๐Ÿ‘ 11    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

every time i feel bad about writing long essays / blog posts i think, no. what would saloni and jacob do.

28.09.2025 09:40 โ€” ๐Ÿ‘ 53    ๐Ÿ” 4    ๐Ÿ’ฌ 5    ๐Ÿ“Œ 0

The reviews are in!

"I heard it just now! So good ๐Ÿ˜Š" โ€“ my mom

"Just listened to the new insulin episode and loved it." โ€“ @rossaokod.bsky.social

"you should have added 5 more minutes on how early researchers checked for the sweetness of animal urine..." โ€“ @pseudoerasmus.bsky.social

17.09.2025 17:01 โ€” ๐Ÿ‘ 12    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

1/3 As someone diagnosed as Type 1 in 1976, I can remember beginning on porcine insulin (bovine was another alternative). The first "human" insulin I had was actually enzymatically modified porcine. I started with glass syringes, with exchangeable all metal needles, stored in methylated spirit.

16.09.2025 19:42 โ€” ๐Ÿ‘ 6    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Very interesting. Thank you so much for sharing!

17.09.2025 00:11 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
100 years of insulin in 15 minutes Podcast Episode ยท Hard Drugs ยท 09/16/2025 ยท 18m

podcasts.apple.com/us/podcast/h...

16.09.2025 18:20 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Last episode: an introduction to what proteins are

This episode: proteins can be medicines!

Insulin is a protein. 104 years ago, no one with diabetes had been injected with it, then came insulin from animals, then came bioreactors...

16.09.2025 18:19 โ€” ๐Ÿ‘ 6    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Saloni and Jacob have a natural way to make everything sound like itโ€™s the coolest thing in the world, so naturally Iโ€™m now all on board of the protein train ๐Ÿš‚

04.09.2025 04:35 โ€” ๐Ÿ‘ 16    ๐Ÿ” 4    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0

AI for protein design won a Nobel Prize last year. Are new protein drugs to cure diseases on their way?

This episode introduces what proteins are. You can listen to it on its own, or as the first plank of us answering that question. Subscribe in a podcast app for future planks!

03.09.2025 18:23 โ€” ๐Ÿ‘ 10    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

life of the statistical paparazzi

25.08.2025 01:05 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Saloni ice cream day 2

Saloni ice cream day 2

I randomly sampled 1 day later and 1 block away from the original photo. Claim supported โœ…

25.08.2025 01:04 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Saloni and pistachio

Saloni and pistachio

Reader, the gelato progressed

24.08.2025 19:16 โ€” ๐Ÿ‘ 18    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
Preview
AI could help lead to an Alzheimerโ€™s cure Lana Del Reyโ€™s โ€œYoung and Beautifulโ€ starts with piano keys, church bells, violins soaring through the first verse. Then a drum roll, and Lana belts out: Will you still love me when Iโ€™m no longer you...

For readers who are sceptical of the promises they've heard about AI, I wrote this piece.

I am more optimistic. I think AI will be a big deal in helping develop new lifesaving drugs:

blog.jacobtrefethen.com/ai-optimism/

Hope you enjoy!

05.08.2025 20:52 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
AI will not suddenly lead to an Alzheimerโ€™s cure I work on funding science for the sake of medical progress, but only 10% of our science funding at Open Philanthropy is related to AI. The whole premise of Open Philanthropy is we try to allocate mone...

I found it difficult to write about the topic for a unified audience, since, in my experience, people have very different starting beliefs about it.

For readers who suspect AI might change everything soon, I wrote this, with a bunch of questions & responses:

blog.jacobtrefethen.com/ai-san-franc...

05.08.2025 20:50 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Preview
What does AI progress mean for medical progress? Rapid AI progress does not automatically mean rapid medical progress. If the point of AI progress is human flourishing, we must make other complementary investments too. Even with extremely powerful A...

Over the weekend I published an essay series on a question I've been thinking about for a while:

What does AI progress mean for medical progress?

It starts with this 500 word piece. If you want more after that, there are 10,000 words of forking paths:

blog.jacobtrefethen.com/ai-progress-...

05.08.2025 20:47 โ€” ๐Ÿ‘ 26    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
Preview
Announcing Our New $120M Abundance And Growth Fund | Open Philanthropy We are excited to announce the launch of our new Abundance and Growth Fund, which will spend at least $120 million over the next three years to accelerate economic growth and boost scientific and tech...

The Abundance and Growth Fund at Open Philanthropy is hiring! Weโ€™re looking for 2-4 people to help expand this new $120+ million program to accelerate economic growth and reduce the cost of living through strategic grantmaking and research. (1/4) www.openphilanthropy.org/research/ann...

09.07.2025 21:16 โ€” ๐Ÿ‘ 25    ๐Ÿ” 9    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 1
Post image

Periodic reminder of this article by @jacobtref.bsky.social: blog.jacobtrefethen.com/10-technolog...

07.07.2025 12:54 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
The end of tuberculosis that wasnโ€™t In the 1980s, many thought tuberculosis was on the path to elimination. In reality, more were dying from the disease than ever.

In the 1980s, many thought tuberculosis was on the path to elimination. In reality, more were dying from the disease than ever.

The second article in our series on Tuberculosis: ourworldindata.org/the-end-of-t...

01.07.2025 06:52 โ€” ๐Ÿ‘ 36    ๐Ÿ” 17    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

I am thankful every day for the work of scientists working to cure HIV/AIDS. We come such a long way.

I lost some amazing people to AIDS and they are missed every single day. I am so happy that this heartbreak can now be avoided thanks to these antivirals.

I still have hope for a cure one day.

26.06.2025 05:52 โ€” ๐Ÿ‘ 2    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Excellent piece on some of the scientists behind lenacapavir, the HIV antiviral that could be scaled up to change the course of the HIV epidemic worldwide.

25.06.2025 21:57 โ€” ๐Ÿ‘ 41    ๐Ÿ” 12    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 2
STAT (@statnews.com) Gileadโ€™s twice-a-year HIV prevention drug lenacapavir is 30 years in the making. Hereโ€™s the story behind it. https://www.statnews.com/2025/06/23/fda-approval-lenacapavir-yeztugo-gilead-history-development-breakthrough-william-pao/?utm_source=bluesky&utm_campaign=bluesky_organic&utm_medium=social

Great article on the origins of lenacapavir, the amazingly effective HIV prevention drug approved by the FDA last week:
bsky.app/profile/sta...

25.06.2025 14:47 โ€” ๐Ÿ‘ 6    ๐Ÿ” 2    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

See, it only takes two weeks to finish, and then you're free... free to start the follow on reading... Go on, why not start listening today... ๐Ÿ˜ˆ

open.spotify.com/show/7CgKi9l...

24.06.2025 19:50 โ€” ๐Ÿ‘ 7    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Listen to Saloniโ€™s podcast if you want a 5hr drug discovery overview so good it made me cry at multiple points

24.06.2025 17:17 โ€” ๐Ÿ‘ 82    ๐Ÿ” 9    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Ten Drugs, Blockbuster Drugs, and Laughing Gas, Viagra, and Lipitor are fun to dip into too. Relatively separable/digestible chapter stories, not too technical.

(So glad you liked the episode!)

24.06.2025 18:15 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
HIV protection with just two shots a year: FDA approves Gilead drug A new twice-yearly shot could be a "game changer" in the fight against AIDS, but experts' hopes have dimmed because of the current political climate.

U.S. FDA approves #lenacapavir (to be sold as Yeztugo), a twice-a-year shot hailed as the closest thing the field has ever had to a #HIV vaccine, by @jasonmast.bsky.social, Ed Silverman www.statnews.com/2025/06/18/f... via @statnews.com #AIDS

18.06.2025 18:44 โ€” ๐Ÿ‘ 30    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
FDA approves new twice-yearly HIV shot. What to know The FDA approved Gilead's HIV prevention drug lenacapavir, a twice-a-year injectable medication that clinical trials show prevents new infections.

A bit of positive news today. FDA has just approved Lenacapavir for PrEP in the US. In clinical trials one injection every 6 months was close to 100% effective in preventing HIV transmission.
PrEP is for everyone who needs it.
www.usatoday.com/story/news/h...

18.06.2025 19:01 โ€” ๐Ÿ‘ 280    ๐Ÿ” 88    ๐Ÿ’ฌ 5    ๐Ÿ“Œ 7
Preview
Regulators Approve a Twice-Yearly Shot to Prevent H.I.V. Infection

www.nytimes.com/2025/06/18/h...

18.06.2025 22:40 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

๐Ÿšจ๐Ÿšจ Lenacapavir FDA approved today, twice-yearly shot preventing HIV ๐Ÿšจ๐Ÿšจ

It's now possible to drive down transmission everywhere, and win against the AIDS epidemic, with other long-lasting drugs in trials too

Here's the story of how scientists got here, 44 years of hard work:

18.06.2025 22:40 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

@jacobtref is following 20 prominent accounts