Phili

let's get the community rolling 💪! Thanks to Vilhelm Suksi from @antagomir.bsky.social 's group for the contribution of the notame vignette 🙌

Exploring and Analyzing LC-MS Data This resource hosts tutorials and end-to-end workflows describing how to analyze LC-MS/MS data, from raw files to annotation, using Bioconductor packages.

🚀 New release: Metabonaut v1.4.0 is here!

1️⃣ New integration with the notame package for robust feature selection. 2️⃣ Added GNPS2 FBMN export for molecular networking.

Explore the updates: rformassspectrometry.github.io/Metabonaut/

#Metabolomics #RStats #OpenScience #MassSpec #Bioconductor

my workshop is available here: jorainer.github.io/xcms4gnps2/ - with contribution from @philouail.bsky.social

Great work from @philouail.bsky.social 🙌

#xcms now fully integrated into @bioconductor.bsky.social 💪

👉 #metabolomics #MassSpectrometry #rstats

@philouail.bsky.social presenting the #Metabonaut tutorials for #metabolomics data analysis at #EuroBioC2025 @bioconductor.bsky.social conference.

@human-dn.bsky.social #MassSpectrometry #ProudPI

here it is: doi.org/10.5281/zeno...

Will do too !

Philippine @philouail.bsky.social presenting #xcms , summary of 20 years development and recent extensions at the #MetSoc2025 conference!

#ProudPI 😎 #rstats @bioconductor.bsky.social #metabolomics #MassSpectrometry

Thank you so much 🥰

@jorainer.bsky.social and @philouail.bsky.social gave a great overview of the ecosystem around #RforMassSpectrometry and #XCMS!

#MetSoc25
I am super glad they now also provide options to combine with #Python and #matchms (thanks🙏)

🚀 New in Metabonaut: tested xcms on a 4,000+ sample LC-MS dataset — all on a laptop! 💻
Fully reproducible + now possible thanks to dev improvements in xcms.
Vignette: rformassspectrometry.github.io/Metabonaut/a...

Big thanks to @jorainer.bsky.social

#RStats #MassSpec #OpenScience #Metabonaut

Work from @philouail.bsky.social with contributions from William Kumler, Pablo Vangeenderhuysen and Carl Brunius! Thanks! 🥳

And big thanks also to the @eubic-ms.org hackathon team contributing to our #SpectriPy package github.com/RforMassSpec... !

Next on the list submission of the package to 👉 @bioconductor.bsky.social

One thing maybe not discussed enough is the long term opportunity cost of not investing and supporting open source software. Imagine the more and better Blenders, GIMPs, Firefoxs, InkScapes, QGISs etc we would of had (+ could have) if open source was taken more seriously by government and businesses

Je ne ferai pas de starter pack.

Ni de dessins copiant Ghibli sans l'autorisation de Miyazaki.

Ces images générées par IA sont irrespectueuses pour des artistes déjà précaires.

Et c'est un gouffre énergétique insensé.

Je préfère qu'il reste de l'eau et de l'art à nos enfants.

LC-MS/MS Data Annotation using R and Python

Combine R + Python seamlessly for LC-MS/MS annotation using #SpectriPy 🧬
Fully reproducible with public #MetaboLights data
🔗 rformassspectrometry.github.io/Metabonaut/a...
#RStats #MassSpec

🚀 Starting the week by sharing Metabonaut:

rformassspectrometry.github.io/Metabonaut/

A collection of comprehensive tutorials for LC-MS/MS data analysis in R! Learn raw data processing, annotation & stats with xcms, RforMassSpectrometry & Bioconductor—all reproducible & community-driven! #rstats