Piotr Kolata's Avatar

Piotr Kolata

@piotrkolata.bsky.social

Postdoc at @mrclmb.bsky.social @matteoall.bsky.social‬ group. Studying #nuclearenvelope across scales #teamtomo and team #cryoEM β„οΈπŸ”¬ previously @viblifesciences.bsky.social, Rouslan Efremov group, respiratory complex I

51 Followers  |  69 Following  |  3 Posts  |  Joined: 20.01.2025  |  1.9826

Latest posts by piotrkolata.bsky.social on Bluesky

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We are excited to announce the first in-cell structure of a LINC complex within a native nuclear envelope at subnanometer resolution!! #In-cell cryo-ET + #atomistic MD simulations! @tomdendooven.bsky.social et al!!
www.biorxiv.org/content/10.1...

05.08.2025 12:41 β€” πŸ‘ 37    πŸ” 13    πŸ’¬ 2    πŸ“Œ 1

Check out our latest work now out on biorxiv www.biorxiv.org/content/10.1...

05.08.2025 11:27 β€” πŸ‘ 9    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0

Congrats Kashish & everyone involved! Awesome stuff!

05.08.2025 11:58 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Attendees of the recent bacteriorhopsin symposium, photographed from above.

Attendees of the recent bacteriorhopsin symposium, photographed from above.

Balsawood model of bacteriorhodopsin

Balsawood model of bacteriorhodopsin

Black and white photograph of Nigel Unwin and Richard Henderson sitting outside the LMB, 1991

Black and white photograph of Nigel Unwin and Richard Henderson sitting outside the LMB, 1991

Symposium attendees applauding in the LMB's Max Perutz Lecture Theatre.

Symposium attendees applauding in the LMB's Max Perutz Lecture Theatre.

The LMB recently hosted a symposium to mark 50 years since Richard Henderson and Nigel Unwin published the structure of bacteriorhodopsin, the first 3D structure of a protein determined by #cryoEM.

Read about the event and find more photos here: www2.mrc-lmb.cam.ac.uk/the-structur...

#LMBNews πŸ§ͺπŸ”¬

04.08.2025 14:32 β€” πŸ‘ 55    πŸ” 10    πŸ’¬ 1    πŸ“Œ 2
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In-cell structure of a LINC complex reveals the molecular basis for membrane remodelling and head-to-tail coupling in sperm cells In eukaryotic cells, LINC complexes physically bridge the two nuclear membranes to cytoskeletal filaments, transmitting mechanical forces to the nucleus. Due to their dynamic and membrane-embedded nat...

Fantastic work by the group of @matteoall.bsky.social : a SUN5:Nesprin3 complex at the head:tail junction of sperm cells. 🀯 #teamtomo

www.biorxiv.org/content/10.1...

05.08.2025 06:14 β€” πŸ‘ 36    πŸ” 16    πŸ’¬ 1    πŸ“Œ 0
Research Support Officer - Structural Studies - Dr Matteo Allegretti - LMB 2674 - Medical Research Council Location: Cambridge. Vacancy: Research Support Officer - Structural Studies - Dr Matteo Allegretti - LMB 2674. Closing Date: 31/08/2025, 23:55

Dear all, we are looking for a research assistant in protein biochemistry / cell biology to support our work on nuclear reshaping in human cells. Here the link to the call, please spread: mrc.tal.net/vx/mobile-0/...

01.08.2025 11:48 β€” πŸ‘ 7    πŸ” 4    πŸ’¬ 0    πŸ“Œ 1
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Sub-3 Γ… resolution protein structure determination by single-particle cryo-EM at 100 keV Cryoelectron microscopy (cryo-EM) has transformed structural biology by providing high-resolution insights into biological macromolecules. We report s…

Now out in Structure: Paper on high-resolution #cryoEM using the 100 kV Tundra cryo-TEM by Dimple Karia, Adrian Koh, @abhaykot.bsky.social, @lingboyu.bsky.social, @landerlab.bsky.social and many others. Happy to have contributed to this effort. Check it out:
www.sciencedirect.com/science/arti...

30.07.2025 21:50 β€” πŸ‘ 77    πŸ” 37    πŸ’¬ 1    πŸ“Œ 0

Cool amyloid structures! Congrats Braja and the team!

26.07.2025 21:01 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Happy to share our latest work on the structure and assembly of holocentric kinetochores! Huge thanks to Ines for a very fruitful collaboration, Claudio for all the support, and congratulations to Christine and all co-authors!

www.biorxiv.org/content/10.1...

15.07.2025 16:36 β€” πŸ‘ 68    πŸ” 24    πŸ’¬ 7    πŸ“Œ 6
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Excited to share our latest work! We found transcription factor SPT6 and phosphorylated Pol II CTD help recruit U1 snRNP to elongating Pol II, allowing efficient co-transcriptional splicing.

Glad to be featured in the Editors’ Highlights!

www.nature.com/articles/s41...

#splicing #cryoEM

10.07.2025 14:29 β€” πŸ‘ 68    πŸ” 21    πŸ’¬ 1    πŸ“Œ 0
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Cryo-EM structure of human telomerase dimer reveals H/ACA RNP-mediated dimerization Telomerase ribonucleoprotein (RNP) synthesizes telomeric repeats at chromosome ends using a telomerase reverse transcriptase (TERT) and a telomerase RNA (hTR in humans). Previous structural work showe...

Proud to share our work where we resolved a longstanding question regarding the existence of a human telomerase dimer and provided insights into its function. Led by 3 amazing lab members in collaboration with @yiliangding.bsky.social and @rdaslab.bsky.social.
www.science.org/doi/10.1126/...

10.07.2025 21:26 β€” πŸ‘ 146    πŸ” 47    πŸ’¬ 7    πŸ“Œ 1

Congratulations Jan & the team, very cool work!

10.07.2025 08:50 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

A novel "bio-tag" for cryo-EM studies based on the small, electron-dense protein Csp1 pubmed.ncbi.nlm.nih.gov/40620219/ #cryoEM

09.07.2025 04:32 β€” πŸ‘ 14    πŸ” 7    πŸ’¬ 0    πŸ“Œ 0
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Structural basis of RECQL5-induced RNA polymerase II transcription braking and subsequent reactivation - Nature Structural & Molecular Biology Using cryo-electron microscopy and biochemistry, Zhang et al. reveal that the DNA helicase RECQL5 and the transcription-coupled DNA repair complex coordinate to regulate transcription elongation rates...

A transcription balance required for genome stability πŸ§¬βš–οΈ

Our work on RNA Pol II transcription speed control by the DNA helicase RECQL5 and the transcription-coupled DNA repair complex is now on @natsmb.nature.com

#CryoEM #transcription #genomestability

www.nature.com/articles/s41...

07.07.2025 14:00 β€” πŸ‘ 19    πŸ” 4    πŸ’¬ 1    πŸ“Œ 1
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New cryo-EM lore just dropped ft Niko and lab
#SmallStackHighRes #2DTM #cryoEM
....

For educational purposes only, copyright: 300 (film), Warner Brothers

07.07.2025 18:27 β€” πŸ‘ 8    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
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To tilt or not to tilt? Strategies for in situ cryo-EM data collection Recent breakthroughs in single-particle cryogenic electron microscopy (cryo-EM) and protein structure prediction have transformed our ability to resol…

Check out our recent review discussing the merits of tilt series vs single micrographs for in situ cryo-EM! www.sciencedirect.com/science/arti...

28.06.2025 14:04 β€” πŸ‘ 64    πŸ” 24    πŸ’¬ 1    πŸ“Œ 3
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Running Phenix and stuck?
Now you can ask the new Phenix chatbot anything from the 600-page tutorial about how to run any program.
Big thanks to Tom Willinger for making this happen!
Try it out: phenix-online.org/version_docs...

23.06.2025 05:14 β€” πŸ‘ 26    πŸ” 10    πŸ’¬ 1    πŸ“Œ 0

Our new preprint revealing a new mechanism of mitochondrial disease pathophysiology: the accumulation of toxic complex I intermediates bound to complex III

www.biorxiv.org/content/10.1...

19.06.2025 18:55 β€” πŸ‘ 7    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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🚨 New preprint!
Using U-ExM + in situ cryo-ET, we show how C2CD3 builds an in-to-out radial architecture connecting the distal centriole lumen to its appendages. Great collab with @cellarchlab.com @chgenoud.bsky.social @stearnslab.bsky.social πŸ™Œ. #TeamTomo #UExM
www.biorxiv.org/content/10.1...

19.06.2025 08:58 β€” πŸ‘ 117    πŸ” 44    πŸ’¬ 0    πŸ“Œ 2
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Cryo-EM structure of the vault from human brain reveals symmetry mismatch at its caps The vault protein is expressed in most eukaryotic cells, where it is assembled on polyribosomes into large hollow barrel-shaped complexes. Despite its widespread and abundant presence in cells, the bi...

The amazing Sofia LΓΆvestam initiated the below project, when she became interested in the vault particles that we sometimes observe in #cryoEM images of brain-derived #amyloid filaments.
www.biorxiv.org/content/10.1...

28.05.2025 07:33 β€” πŸ‘ 59    πŸ” 23    πŸ’¬ 2    πŸ“Œ 0
At left, a reconstruction of the vault cap with C39 symmetry imposed; at right, the reconstruction after identifying the correct symmetry, with the three non-equivalent protomers highlighted.

At left, a reconstruction of the vault cap with C39 symmetry imposed; at right, the reconstruction after identifying the correct symmetry, with the three non-equivalent protomers highlighted.

1/x New story - the structure of the Vault cap, at 2.3Γ…! Matching a beautiful preprint from @sjorsscheres.bsky.social, we show that the cap of the vault particle has C13 symmetry, in contrast to the 39-fold symmetry of the body. Study lead by talented postdoc @huanli00.bsky.social from my group! ⬇️

12.06.2025 13:44 β€” πŸ‘ 111    πŸ” 27    πŸ’¬ 2    πŸ“Œ 5
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We have a preprint for you

EHD2 forms rings on caveolae necks, in contrast to most EHDs forming helices. We determined its structure on membranes and show that N-term acts as a spacer

By Elena, Vasya @vasiliimikirtumov.bsky.social, Jeff &Oli Daumke www.biorxiv.org/content/10.1...

08.06.2025 11:21 β€” πŸ‘ 106    πŸ” 34    πŸ’¬ 4    πŸ“Œ 0
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spent some time this evening updating the teamtomo.org site - if you're interested in cryo-EM + Python you might want to take a look around!

30.05.2025 08:29 β€” πŸ‘ 48    πŸ” 13    πŸ’¬ 0    πŸ“Œ 0
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Chemists recreate how RNA might have reproduced for first time Chemists at UCL and the MRC Laboratory of Molecular Biology have demonstrated how RNA (ribonucleic acid) might have replicated itself on early Earth – a key process in the origin of life.

How did life on Earth begin? 🌍🧬
New #LMBResearch from Phil Holliger’s group, including James Attwater (now @uclchemistry.bsky.social‬‬ @uclnews.bsky.social) shows how pH-freeze-thaw cycles enables RNA self-replication, overcoming a key evolutionary hurdle.‬
Read more: www.ucl.ac.uk/news/2025/ma...

29.05.2025 08:40 β€” πŸ‘ 29    πŸ” 12    πŸ’¬ 1    πŸ“Œ 0
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We are happy to release LocScale2.0: a tool for context-aware, confidence-weighted cryoEM map optimisation.

Taking two half maps as input, LcoScale-2.0 produces feature-enhanced maps along with a robust confidence score that guides objective map interpretation.

cryotud.github.io/locscale/

22.05.2025 10:10 β€” πŸ‘ 114    πŸ” 37    πŸ’¬ 1    πŸ“Œ 1
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Cambridge Biomedical Campus could double economic output to Β£13bn in a decade The Cambridge Biomedical Campus – already the largest centre of medical research and health science in Europe – could double its economic output in a decade if the right development approach is adopte...

New analysis shows that our Campus already contributes Β£4.7bn a year to the UK economy, which could more than double to Β£13 billion by 2035.

www.businessweekly.co.uk/posts/cambri...

23.05.2025 14:37 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0

Problem cryo-ET structure alert. A recent paper by Lange et al. in @natcellbio.nature.com (tinyurl.com/38s6a4dn) reported an unusual-looking model of the prohibitin complex in situ. We asked: how was this structure generated? Our reanalysis offers an explanation: tinyurl.com/mszdtwxx 🧡

20.05.2025 20:57 β€” πŸ‘ 36    πŸ” 12    πŸ’¬ 2    πŸ“Œ 1
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In our latest preprint we used cryoEM to solve the structure of A-ENA fibers and show that they are stabilized by 10 isopeptide bonds per monomer. A-ENA couples the spore to the cry-toxins, and in doing so increases the virulence of Bacillus thuringiensis: www.researchsquare.com/article/rs-6...

20.05.2025 09:22 β€” πŸ‘ 36    πŸ” 12    πŸ’¬ 1    πŸ“Œ 1
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@science.org πŸ§«πŸ§¬β„οΈπŸ”¬ Molecular basis of influenza ribonucleoprotein complex assembly and processive RNA synthesis | Science www.science.org/doi/10.1126/...
@yiweichang.bsky.social www.yiweichanglab.org @jiwasa.bsky.social #virology #Influenza #Cryo-EM #StructuralBiology #RNA #polymerase

15.05.2025 23:11 β€” πŸ‘ 90    πŸ” 21    πŸ’¬ 3    πŸ“Œ 3
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1/10 Today in @science.org in collaboration with
the Liu group we report the development of a laboratory-evolved CRISPR-associated transposase (evoCAST) that supports therapeutically relevant levels of RNA-programmable gene insertion in human cells. drive.google.com/file/d/1I-Ub...

15.05.2025 22:49 β€” πŸ‘ 133    πŸ” 59    πŸ’¬ 2    πŸ“Œ 5

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