The songbird basal ganglia connectome
The basal ganglia (BG) play an essential role in shaping vertebrate behavior, ranging from motor learning to emotions, but comprehensive maps of their canonical synaptic architecture are missing. In m...
I am happy to share that the main story of my PhD is now available as a preprint! www.biorxiv.org/content/10.1...
We analyses over 8500 neurons in a songbird basal ganglia dataset.
To explore this and two other stories more interactively, also check out our website!
www.songbird-connectomics.org
30.10.2025 18:07 β π 4 π 2 π¬ 0 π 0
songbird basal ganglia connectome
So proud of my new lab! Check out the recent songbird basal ganglia connectome - great job @alexandrarother.bsky.social !!
@jmrko.bsky.social !!
songbird-connectomics.org
29.10.2025 17:36 β π 4 π 2 π¬ 0 π 0
Thank you so much @wellcometrust.bsky.social for supporting us to push the the limits of #X-ray #nanoimaging and #connectomics, and to make technology more broadly available to the scientific community! π
27.10.2025 17:39 β π 13 π 3 π¬ 0 π 0
Excited to try this! The waiting list makes me even more curious
15.10.2025 15:56 β π 3 π 4 π¬ 1 π 0
The Crick is an absolutely amazing place to work in - please share this opportunity widely with your colleagues and postdocs - and DM me if I can help in any way
09.10.2025 15:00 β π 5 π 3 π¬ 1 π 0
Apply now!!! π₯
06.10.2025 16:44 β π 6 π 5 π¬ 0 π 0
Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context https://www.biorxiv.org/content/10.1101/2025.09.26.678648v1
28.09.2025 21:15 β π 7 π 5 π¬ 0 π 0
Hard X-ray imaging of biological soft tissues symposium 2025
#Nanoimaging symposium @crick.ac.uk!
At #CrickXrays25 we'll tackle:
π«synchrotron upgrades
πcurrent limits in throughput, volume, resolution
π§ͺsample preparation for X-ray PC imaging
π§ β₯οΈapplications in neuroscience and tissue life science
ποΈ13th October 2025
π¬π§π London & online
tinyurl.com/crickxrays25
23.09.2025 10:43 β π 9 π 7 π¬ 1 π 1
This is fantastic news, congratulations! Very well deserved!
07.09.2025 23:00 β π 0 π 0 π¬ 0 π 0
Highly recommended
15.08.2025 19:51 β π 1 π 0 π¬ 0 π 0
It was a good experience to step back and briefly take stock of the amazing progress in connectomics since I started working on this stuff (20 years ago!)
thanks as well to @natrevneuro.nature.com for the constructive editorial interactions.
14.08.2025 19:40 β π 37 π 13 π¬ 0 π 0
Multiplexed Neuromodulatory-Type-Annotated EM-Reconstruction of Larval Zebrafish https://www.biorxiv.org/content/10.1101/2025.06.12.659365v1
16.06.2025 02:19 β π 2 π 1 π¬ 0 π 0
Recurrent connectivity supports carbon dioxide sensitivity in Aedes aegypti mosquitoes
The mosquito Aedes aegyptiβ²s human host-seeking behavior depends on the integration of multiple sensory cues. One of these cues, carbon dioxide (CO2), gates odorant and heat pathways and activates hos...
New preprint from @darbly.bsky.social⬠@briandepasquale.bsky.social⬠and my labs! If you love (or hate) mosquitoes, have a look:
doi.org/10.1101/2025...
We used TEM to describe the circuitry used for CO2 detection by mosquitoes. As usual with mosquitoes, nothing is as expected! π¬οΈπ¦
31.07.2025 12:28 β π 33 π 14 π¬ 3 π 1
The first full central nervous system connectome dataset of an adult fly, with the most comprehensive annotation of sensory and motor neurons to date.
A heroic effort with contributions from many groups, a product of the collaborative spirit of the Drosophila neuroscience community.
01.08.2025 23:14 β π 40 π 12 π¬ 1 π 0
Fantastic to see this collaborative work with Hopi Hoekstra out in Nature (tinyurl.com/3at3zvby). Lead by @felixbaier.bsky.social and @katjareinhard.bsky.social. Not possible without @bramnuttin.bsky.social , Chen Liu and @arnausd.bsky.social.
Excited to see where this work leads.
23.07.2025 23:55 β π 32 π 12 π¬ 0 π 0
Kedar Narayan (right) holds the Alan Agar Award, presented by Paul Verkade (left), who is holding Kedar's certificate. They are both smiling, standing next to a lectern inside a lecture hall.
Huge congratulations to Kedar Narayan who received the RMS Alan Agar Award for #ElectronMicroscopy from Paul Verkade this afternoon at #mmc2025
ππππ¬ππ₯
@rmsearlycareer.bsky.social @yorkbioimaging.bsky.social
01.07.2025 15:17 β π 16 π 4 π¬ 0 π 0
Congratulations Aaron, very well deserved!
01.07.2025 17:55 β π 0 π 0 π¬ 0 π 0
Proud to share our latest paper. doi.org/10.1016/j.cr...
Through the dedication of @glynnca.bsky.social and @cryingem.bsky.social we report a thorough method to image molecular organisation within hippocampus tissue.
Structural biology in tissue is well and truly here!
@rosfrankinst.bsky.social
17.06.2025 10:59 β π 62 π 24 π¬ 2 π 4
If you want to learn the latest developments in volumeEM from the experts, with hands-on experience on our instruments @embl.org, this course is for you! π¬
24.04.2025 12:17 β π 19 π 12 π¬ 0 π 0
Introducing warpfield, an open source Python library for GPU-accelerated non-rigid 3D registration. Warps and aligns gigavoxel volumes within seconds (not hours). For 3D microscopy, region-to-region and cell-to-cell matching.
A collaboration with @mh123.bsky.social π
github.com/danionella/w...
12.05.2025 05:25 β π 195 π 54 π¬ 7 π 3
Linking function and structure at scale with X-rays - and several times over. Massive congratulations to the team βͺ@yuxinzhang.bsky.socialβ¬, @carlesbosch.bsky.social, @apacureanu.bsky.social @esrf.fr, @crick.ac.uk and all our collaborators.
01.05.2025 12:24 β π 27 π 7 π¬ 1 π 1
#preprint:
We mapped the structure and function of olfactory bulb circuits with in vivo 2-photon microscopy and synchrotron #Xray holographic nanotomography.
doi.org/10.1101/2025...
@yuxinzhang.bsky.social @andreas-t-schaefer.bsky.social @apacureanu.bsky.social
@crick.ac.uk @esrf.fr
01.05.2025 13:38 β π 62 π 22 π¬ 1 π 4
I am honored and excited to announce that I will be starting as group leader at @dandrite.bsky.social and associate professor at @au.dk in August 2025. I look forward very much to joining my future colleagues in Aarhus in doing excellent Neuroscience, with many scientific puzzles ahead to solve!
30.04.2025 16:17 β π 10 π 1 π¬ 1 π 0
I am very happy and thankful for having been part of this amazing journey. Enjoy exploring this incredibly rich dataset!
09.04.2025 18:42 β π 3 π 1 π¬ 0 π 0
PhD Candidate in Neurobiology
connectomics, python and basal ganglia
(she/her)
Researcher at Cold Spring Harbor Laboratory; Interests: Neuroscience, Predictive processing, Olfaction; albeanulab.cshl.edu
Neuroscience & functional ultrasound imaging. Vision and brain states. Professor at University Medical Center GΓΆttingen. https://brainwidenetworks.uni-goettingen.de/ Co-Spokesperson, EKFZ Center for Optogenetic Therapies. https://ekfz.uni-goettingen.de/en/
PhD candidate in neurobiology at UChicago // Kasthuri lab // connectomics and development of the dentate gyrus
Passionate about all things microscopy, especially Volume Electron Microscopy & Correlative Microscopy! Managing the Life Sciences & Soft Matter Laboratory at CMM, UQ.
Neuroscientist interested in mechanisms of learning and behavior with a focus in connectomics. Postdoc - Kornfeld Lab
Neuroscientist @crick.ac.uk asking how information is processed in the brain.
Odours. Circuits. Neurotechnology. Synchrotrons. BCIs.
Co-founder Paradromics
Twitter: @AndreasTSchafer
Neuroscientist studying thalamic circuits for vision
Computational neuroscience and connectomics
Group Leader at Ernst Struengmann Institute for Neuroscience in Frankfurt. The more synapses the better #connectomics.
Brain enthusiast. Posts are my own views/opinions. She/her
NeuroProf at University of Sussex, UK β’ Synapses, Circuits, Plasticity, Disease, Decision-making
https://www.thestaraslab.org/
π¬ studying form and function at ETH D-BSSE
ποΈ steering council and core dev of napari
https://kevinyamauchi.github.io/
Epigenetic Inheritance, Neuroscience & anything biology-related
https://www.odedrechavilab.com/
https://www.qedscience.com
Organizer of βThe Woodstock of Biologyβ
TED: https://shorturl.at/myFTY
Huberman Lab Podcast: https://youtu.be/CDUetQMKM6g
Research scientist at Google in Zurich
http://research.google/teams/connectomics
PhD from @mackelab.bsky.social
Scientist studying biological tissues with neuronal circuits inside. Tweets my own.
AquΓ, tuitejo el quΓ¨ em passa pel cap molt de tant en tant.
trickymons@X, cbosch@mastodon.world