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Julia Bubis

@jbubis.bsky.social

Proteomics, Mass Spec, Method Dev, Single Cell Proteomics, Data Analysis

113 Followers  |  106 Following  |  10 Posts  |  Joined: 20.11.2024  |  2.0093

Latest posts by jbubis.bsky.social on Bluesky

Spotted at Ion Opticks booth🀣 yeah, I am at #HUPO2025. Let’s chat :)

10.11.2025 17:50 β€” πŸ‘ 5    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Congrats! and good luck!:)

09.05.2025 06:41 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

At Uni, at Mike Gorshkov lab. First good practical skills I gained in Denmark, at SDU. Then reading articles helped a lot:) And I am still learning:)

20.03.2025 17:54 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I just wanted to share some painful experience related to weird mass accuracy, that we faced in the past, and which took us quite some time to investigate:) Maybe it will be helpful for someone else:)

21.02.2025 09:56 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

However, if data with different CVs and for each CV mass acc differs, the distribution will be bimodal. So the correction will be either suboptimal or need to be done separately for each CV.

21.02.2025 09:45 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Oh, yeah:) let’s me paraphrase. My example isn’t the cause of this strange behaviour. It’s additional layer, which can cause similar strange behaviour:) for this data, one can nicely correct mass shifts.

21.02.2025 09:45 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I’m a bit surprised that somebody remembers this article:) thank you:)

20.02.2025 13:57 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

It's also good to check mass acc for different Compensation Voltages separately. We also once had raw files, where mass acc was shifted only for one CV, and completely ok for the other.

20.02.2025 13:12 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

I guess you can find the right answer in the author listπŸ˜€ in this case, the intuition won't fail for sureπŸ˜€

16.01.2025 10:15 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Preview
Challenging the Astral mass analyzer to quantify up to 5,300 proteins per single cell at unseen accuracy to uncover cellular heterogeneity - Nature Methods An ultra-low-input single-cell proteomic workflow is optimized to yield maximum proteome coverage with high accuracy and precision on the Orbitrap Astral mass spectrometer.

Finally, it is out!:) #SCP #Astral #massspectromentry www.nature.com/articles/s41...

16.01.2025 10:06 β€” πŸ‘ 19    πŸ” 5    πŸ’¬ 1    πŸ“Œ 0

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