Juan Henao has published a post on the #tidyomics blog introducing *omicslog*, which tracks and stores data manipulation directly from tidy R (and base R) workflows, in the data object itself!
Inspired by `tidylog`.
Feedback welcome!
@bioconductor.bsky.social
06.01.2026 03:21 — 👍 0 🔁 0 💬 0 📌 0
Omicslog – tidyomicsBlog
Providing logging capabilities for SummarizedExperiment objects.
Reproducibility is key to science. In computational biology, we routinely manipulate high-dimensional data (spatial, single-cell, bulk) through filtering, normalisation and transformation. Capturing those steps clearly improves reproducibility and transparency.
tidyomics.github.io/tidyomicsBlo...
06.01.2026 03:13 — 👍 21 🔁 8 💬 1 📌 0
A great last #tidyomics meeting of the year, looking forward to more of these in 2026!
@bioconductor.bsky.social
18.12.2025 00:33 — 👍 2 🔁 1 💬 0 📌 0
The last #tidyomics meeting of the year is in 2 days. Everyone welcome!
- 16 Dec, 3:30 pm (EST; New York)
- 16 Dec, 9:30 pm (CET; Berlin)
- 17 Dec, 7:30 am (AEDT; Melbourne)
We will chat about plans for next year.
Zoom link: shorturl.at/Epbbc
@mikelove.bsky.social @bioconductor.bsky.social
15.12.2025 00:47 — 👍 5 🔁 2 💬 0 📌 1
The Tidyomics Ecosystem – tidyomicsBlog
An introduction to the tidyomics ecosystem, including principles, core packages, publications, and community resources for tidy omic analysis.
It's official! The #tidyomics blog is up! 🚀
Here, the introductory post
tidyomics.github.io/tidyomicsBlo...
This blog aims to publish not only news about our community but also anything related to tidy interfaces, opinions, events, and more.
Plz share! 🙏
@bioconductor.bsky.social #rstats
07.12.2025 23:07 — 👍 27 🔁 13 💬 0 📌 1
Amazing event! It is good to see the Adelaide community coming together!
#ABACBS2025
29.11.2025 02:29 — 👍 11 🔁 1 💬 0 📌 0
Well done, William Hutchison! For an amazing talk about prostate cancer tumour microenvironment at #ABACBS2025
Also, well done on a great workshop on #tidyomics and his #tidySpatialExperiment
@bioconductor.bsky.social
27.11.2025 22:54 — 👍 9 🔁 0 💬 0 📌 0
@bioconductor.bsky.social
27.11.2025 05:06 — 👍 2 🔁 0 💬 0 📌 0
The Euro Bioc 2026 in Turku is official!
27.11.2025 05:06 — 👍 11 🔁 5 💬 1 📌 0
Registrations for the @abacbs.bsky.social and @bioconductor.bsky.social #BiocAsia workshops close TOMORROW at 5PM!
Don't miss the opportunity to learn the new trends in computational biology!
20.11.2025 04:32 — 👍 1 🔁 0 💬 0 📌 0
ABACBS/BioC Asia 2025 Workshops are coming! @ Adelaide 27-28 November.
Join us in November for two days of deep-dive sessions on scalable bioinformatics, spatial omics, AI-driven genomics, and more
blackochrelabs.au/abacbs2025_w...
#Bioinformatics @abacbs.bsky.social @bioconductor.bsky.social
14.10.2025 00:46 — 👍 7 🔁 4 💬 0 📌 2
spatial Omics in R/Bioconductor
18-20 May 2026 To foster international participation, this course will be held online
🚀 Curious about #SpatialOmics? Want to master spatial omics data analysis using #Rstats and @bioconductor.bsky.social ?
🔥 Registrations are now OPEN for the 3rd edition of our hands-on course with @stemang.bsky.social !
📅 Save the dates: 18–20 May 2026
www.physalia-courses.org/courses-work...
07.10.2025 15:05 — 👍 4 🔁 3 💬 0 📌 0
Join us for another tidyomics meeting tomorrow!
We will chat about several news
- tidyprint
- tidybulk V2
- omicslog
- and more!
08.09.2025 23:41 — 👍 7 🔁 1 💬 0 📌 0
Join us for an interesting discussion on using AI with foundational models in biology!
26.08.2025 00:24 — 👍 1 🔁 0 💬 0 📌 0
Join #AI and #Immunology!
📢 Fully funded #PhD @saigenci.bsky.social: develop AI to chart immune diversity across the population, in #cancer.
CV, transcript, and a one-page statement by 30 August 2025 → www.linkedin.com/feed/update/...
#PhDOpportunity #MachineLearning #SingleCell
06.08.2025 02:55 — 👍 2 🔁 2 💬 0 📌 0
Two days to apply for a BiocAsia workshop!
- Did you develop a package you want to showcase?
- You want to share an analysis workflow for your favourite data type?
This is your time to share this with the community!
Submission -> biocasia2025.bioconductor.org
@bioconductor.bsky.social
30.07.2025 00:46 — 👍 0 🔁 0 💬 0 📌 0
BiocAsia will collaborate with ABACBS for the 2025 conference (Adelaide) to bring you a full day of workshops!
Have you thought about teaching a workshop about your or someone else's package or a workflow?
This is the time! Submit your proposal by the 1st of August.
14.07.2025 06:23 — 👍 2 🔁 1 💬 0 📌 0
Vince Carey opening GBCC2025 with a slide highlighting Bioconductor’s technical and community advances.
Charlotte Soneson delivering her keynote titled “From classes to community: how Bioconductor has advanced my research.”
Slide showing GBCC2025 sponsors and supporters - CZI, Limagrain, GalaxyWorks, Bristol Myers Squibb, R Consortium, Gigascience, ELIXIR, NHGRI
Large group photo of GBCC2025 attendees outdoors at Cold Spring Harbor Laboratory, smiling and gathered on the steps.
Big thanks to everyone who made #GBCC2025 a fantastic week of science, collaboration, and community!
Highlights for Bioconductor included keynotes, hands-on projects, and great conversations 💻🧬
@galaxyproject.bsky.social @bioconductor.bsky.social
01.07.2025 13:14 — 👍 9 🔁 3 💬 0 📌 0
What a cover! Looking forward to sharing our work with you!
02.07.2025 06:15 — 👍 2 🔁 1 💬 1 📌 0
Today, I had a blast at the @mig-unimelb.bsky.social
MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology.
Thanks Heejung, Kim-Anh and all the MIG!
events.unimelb.edu.au/MIG/event/45...
23.05.2025 06:18 — 👍 1 🔁 0 💬 0 📌 0
Thanks @physaliacourses.bsky.social, it was a blast! And the great active audience made it so enjoyable!
23.05.2025 06:14 — 👍 2 🔁 1 💬 0 📌 0
Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!
19.05.2025 11:10 — 👍 2 🔁 0 💬 0 📌 0
In few hours we have the second #tidyomics meeting! where we will talk about workshops, communication and education and more.
Thursday March 27 with a Europe friendly meeting time (12:00 CET)
Join the @bioconductor.bsky.social slack channel to know more #tidiness_in_bioc channel
Join us
27.03.2025 06:48 — 👍 1 🔁 2 💬 0 📌 0
We encourage diverse participation regardless of background, gender, or beliefs.
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
17.03.2025 06:35 — 👍 0 🔁 0 💬 0 📌 0
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
17.03.2025 06:32 — 👍 1 🔁 0 💬 1 📌 2
spatial Omics in R/Bioconductor
19-21 May 2025 To foster international participation, this course will be held online
🚀 Interested Spatial Omics with R/Bioconductor?
🧨Do you want to learn how to analyse these data in R with the #tidyverse?
Join us in May for this course with @stemang.bsky.social & @lgmartelotto.bsky.social
🔗 www.physalia-courses.org/courses-work...
#SpatialOmics #Bioinformatics #RStats
14.03.2025 07:52 — 👍 11 🔁 3 💬 0 📌 0
True 5PM. Sorry for that.
11.03.2025 22:05 — 👍 1 🔁 0 💬 0 📌 0
@bioconductor.bsky.social @mikelove.bsky.social
11.03.2025 02:23 — 👍 0 🔁 0 💬 1 📌 0
GitHub - tidyomics/tidyprint
Contribute to tidyomics/tidyprint development by creating an account on GitHub.
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> github.com/tidyomics/ti...
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/archives/CEQ...
Pls share!
11.03.2025 02:23 — 👍 7 🔁 2 💬 1 📌 2
Data scientist & bioinformatician. Doctoral Researcher at the University of Turku in the Turku Data Science Group. Member of Bioconductor Community Advisory Board. Member of board of Finnish Society for Bioinformatics. MSc (Tech) & MSc (Econ). Finland.
❤️📊 | 🗣️DE|EN|FR | #rstats | #econsky
The Australian Bioinformatics and Computational Biology Society Inc. Promoting the science and profession of bioinformatics
https://www.abacbs.org
R, data, 🐕, 🍸, 🌈. He/him.
Melbourne Integrative Genomics (MIG) is an interdisciplinary initiative of the University of Melbourne.
https://sites.research.unimelb.edu.au/integrative-genomics
PhD in Computer Science. Information Retrieval, Human-AI Cooperation, Evaluation.
@rmitcomputing.bsky.social | @admscentre.org.au | @internetobservatory.org.au
🤸🏼♂️Contramestre Camaleão, Capoeira ACDP.
🪘Percussionist @ Wombatuque
📍Naarm, AU
Associate Professsor @upf.edu. Computational genomics R/Bioc developer. Innate curiosity. Views my own. He/him, vi/vim. Mastodon: @robertclab@genomic.social. Twitter: @robertclab
Scientific illustration, Figure Design, Logo Creation, and Web Design
We transform discoveries into artistic masterpieces #SciArt
✉️ contact@drawimpacts.com
Official site of the Jenkins Laboratory (CISL) at the South Australian immunoGENomics Cancer Institute (SAiGENCI), The University of Adelaide
Applied statistician. I tweet data-driven observations, data science educational materials, academic research updates, and the occasional joke.
Statistical Bioinformagician with interests in cytometry and precision medicine.
Associate Professor at the University of Sydney, Sydney Precision Data Science Centre, and Westmead Institute for Medical Research.
https://ellispatrick.github.io/
Head, Bioinformatics and Cellular Genomics Lab,
St Vincent's Institute of Medical Research, Melbourne. Stats, AI/ML, bioinformatics, genomics, single-cell.
https://www.svi.edu.au/researchers/dr-davis-mccarthy/
Bioconductor: Free, open-source software for rigorous, reproducible biological data analysis with R. Join our diverse community of developers and data scientists.
https://bioconductor.org/
Post-doctoral researcher at the University of Adelaide (South Australian Immunogenomics Cancer Institute) with an interest in cancer systems biology and spatial omics data.
Lab Head in #bioinformatics developing #opensource #rstats #bioconductor packages for #singlecell #nanopore #rnaseq analysis, Melbourne, AU
Software & data: https://mritchielab.github.io
LinkedIn: https://www.linkedin.com/in/matthew-ritchie-5a468880
statistical bioinformatics; canadian / swiss; #methodsmatter #rstats; open science advocate; grumpy towards prestige worshippers, excessive admin and bros; will sacrifice sleep for a sunrise.
https://robinsonlabuzh.github.io/
Data visualization researcher. Associate Prof of CS at the University of Utah. Lab website: https://vdl.sci.utah.edu. Co-founder of
datavisyn: https://datavisyn.io
🇦🇺 They/Them. Biological data nerd & Bioconductor contributor. Black Ochre Data Labs. Intermittent musician.
Interested in Bioinformatics, Aboriginal Health, Covid Research, Transgender Rights & Politics. You'll get all of those from me at random
Statistician, Computational Biologist, R |> Bioconductor
https://www.huber.embl.de
Textbook: Modern Statistics for Modern Biology https://www.huber.embl.de/msmb/ (with @sherlockpholmes.bsky.social)
