@stemang.bsky.social
Computational cancer-immunology and tumour microenvironment @SAiGENCI and @WEHI_research, VCA fellow @VicGovDH
Join #AI and #Immunology!
📢 Fully funded #PhD @saigenci.bsky.social: develop AI to chart immune diversity across the population, in #cancer.
CV, transcript, and a one-page statement by 30 August 2025 → www.linkedin.com/feed/update/...
#PhDOpportunity #MachineLearning #SingleCell
Two days to apply for a BiocAsia workshop!
- Did you develop a package you want to showcase?
- You want to share an analysis workflow for your favourite data type?
This is your time to share this with the community!
Submission -> biocasia2025.bioconductor.org
@bioconductor.bsky.social
BiocAsia will collaborate with ABACBS for the 2025 conference (Adelaide) to bring you a full day of workshops!
Have you thought about teaching a workshop about your or someone else's package or a workflow?
This is the time! Submit your proposal by the 1st of August.
Vince Carey opening GBCC2025 with a slide highlighting Bioconductor’s technical and community advances.
Charlotte Soneson delivering her keynote titled “From classes to community: how Bioconductor has advanced my research.”
Slide showing GBCC2025 sponsors and supporters - CZI, Limagrain, GalaxyWorks, Bristol Myers Squibb, R Consortium, Gigascience, ELIXIR, NHGRI
Large group photo of GBCC2025 attendees outdoors at Cold Spring Harbor Laboratory, smiling and gathered on the steps.
Big thanks to everyone who made #GBCC2025 a fantastic week of science, collaboration, and community!
Highlights for Bioconductor included keynotes, hands-on projects, and great conversations 💻🧬
@galaxyproject.bsky.social @bioconductor.bsky.social
What a cover! Looking forward to sharing our work with you!
02.07.2025 06:15 — 👍 2 🔁 1 💬 1 📌 0
Today, I had a blast at the @mig-unimelb.bsky.social
MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology.
Thanks Heejung, Kim-Anh and all the MIG!
events.unimelb.edu.au/MIG/event/45...
Thanks @physaliacourses.bsky.social, it was a blast! And the great active audience made it so enjoyable!
23.05.2025 06:14 — 👍 2 🔁 1 💬 0 📌 0Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!
19.05.2025 11:10 — 👍 2 🔁 0 💬 0 📌 0In few hours we have the second #tidyomics meeting! where we will talk about workshops, communication and education and more.
Thursday March 27 with a Europe friendly meeting time (12:00 CET)
Join the @bioconductor.bsky.social slack channel to know more #tidiness_in_bioc channel
Join us
We encourage diverse participation regardless of background, gender, or beliefs.
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
🚀 Interested Spatial Omics with R/Bioconductor?
🧨Do you want to learn how to analyse these data in R with the #tidyverse?
Join us in May for this course with @stemang.bsky.social & @lgmartelotto.bsky.social
🔗 www.physalia-courses.org/courses-work...
#SpatialOmics #Bioinformatics #RStats
True 5PM. Sorry for that.
11.03.2025 22:05 — 👍 1 🔁 0 💬 0 📌 0@bioconductor.bsky.social @mikelove.bsky.social
11.03.2025 02:23 — 👍 0 🔁 0 💬 1 📌 0
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> github.com/tidyomics/ti...
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/archives/CEQ...
Pls share!
📅 Tidyomics next meeting is Wed, Mar 12 at 4PM NY / 9PM London / 8AM (Thurs) Melbourne. They'll discuss enhancing SummarizedExperiment display & seek feedback on tidyprint package. See Bioconductor Slack #tidiness-in-bioc channel or events calendar for more info: buff.ly/rdhL3jL
#Tidyomics #RStats
📢 An exciting #Postdoc position opened in our laboratory for a junior #Bioinformatician!
Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe.
careers.adelaide.edu.au/cw/en/job/51...
Pls share! 🙏
#postdocposition
@bhuvad.bsky.social
29.01.2025 08:44 — 👍 1 🔁 0 💬 0 📌 0The Python implementation is in Beta, and we welcome feedback!
22.01.2025 02:57 — 👍 0 🔁 0 💬 0 📌 0
We (Chen Zhan!) just launched #sccomp for #Python!
Testing for differences in cell-type proportion in #singlecell #spatial data?
#sccomp is a mixed-effect Bayesian model
- Use sum-constrained BetaBinomial distribution
- Outliers detect.
- Remove unwanted effects
github.com/MangiolaLabo...
A great Team!
20.01.2025 01:27 — 👍 4 🔁 0 💬 0 📌 0The hope is that this collaborative model can be applied more broadly, creating a virtuous circle to boost research and support research diversity.
Contributions are welcome from diverse computational fields, e.g. #Physics #ecology #maths #biology, ...
Would you open your paper to a modular open-collaboration model?
It was game-changing for #tidyomics
If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines
Comment on the shared doc: docs.google.com/document/d/1...
Please share 🙏
📢🙏 Dear Research Community! A call 👇 to contribute to defining the #guidelines of the #CrowdToPaper research model, as tested for tidyomics doi.org/10.1038/s415...
We welcome feedback from all research fields through comments on docs.google.com/document/d/1...
🙏 Plz Share! ❤️Thank you!
🚀 Ready to learn about Spatial Omics? Learn from @stemang.bsky.social & @lgmartelotto.bsky.social in this hands-on R/Bioconductor course!
Master imaging vs. sequencing methods, experimental design & tidy data principles for cutting-edge spatial omics analysis
www.physalia-courses.org/courses-work...
📢💻🧪 2 #PhD #Scholarships available @SAiGENCI:
1) Hybrid wet-dry: #multiomics to predict neoadjuvant response in #cancer
2) #Bioinformatics, comp-bio: large-scale #singlecell modelling and infrastructure
🔗https://researchers.adelaide.edu.au/profile/stefano.mangiola#my-research
Please share! 🙏
Amazing #BiocAsia2024 event! Thanks to all who participated!
Looking forward to next year!
@bioconductor.bsky.social
Love it! Great way to use #tidyHeatmap, with good taste for style! :)
28.10.2024 00:32 — 👍 0 🔁 0 💬 0 📌 0unimelb.zoom.us/j/88334039518?pwd=EU0W9q7OsMbSO27693Ka5raygBet99.1
pw: 542990
Hello Community! Don't miss the #tidyomics meeting in one week! All welcome! plz share 🙏
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
