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Tim Monko

@timmonko.bsky.social

napari community manager and core dev, developmental neuroscientist, birder, and the proudest papa.

91 Followers  |  95 Following  |  3 Posts  |  Joined: 24.11.2024  |  1.9338

Latest posts by timmonko.bsky.social on Bluesky

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Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...

Job alert!

We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?

See also on the forum:
forum.image.sc/t/research-e...

07.10.2025 12:39 โ€” ๐Ÿ‘ 52    ๐Ÿ” 68    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 8
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Meeting schedule We hold regular meetings, the timings of which are available on our public calendar. If you are using napari or interested in how napari could be used in your work, please join one of our regular comm...

Join the new plugin sustainability initiative!

Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...

Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...

The first zoom meeting will be this coming week: napari.org/stable/commu...

06.10.2025 03:56 โ€” ๐Ÿ‘ 13    ๐Ÿ” 7    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Halfway to I2K is BACK, friends of all kinds! Last year, 650 people attended 30+ TOTALLY FREE image analysis workshops of all kinds, across many timezones.

If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.

23.09.2025 15:48 โ€” ๐Ÿ‘ 49    ๐Ÿ” 32    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
Image depicting the napari viewer in grid mode with scale bars and color bars enabled

Image depicting the napari viewer in grid mode with scale bars and color bars enabled

napari 0.6.5 is out! ๐Ÿš€

Rapid-fire highlights are: colorbar overlay, custom startup script, and better and prettier documentation! Check out the full release notes here: napari.org/dev/release/...

02.10.2025 11:44 โ€” ๐Ÿ‘ 27    ๐Ÿ” 12    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Release Notes Each section shows the highlights from recent releases. Click on the version links to view the complete release notes. Last updated: September 17, 2025 Recent Releases (Last 3 Months): Latest features...

Check out the cool new โ€œrelease highlights historyโ€ page @timmonko.bsky.social cooked up for us! ๐Ÿ˜

napari.org/stable/relea...

Best of all: itโ€™s automatically generated from release notes so itโ€™ll always stay up to date.

20.09.2025 13:26 โ€” ๐Ÿ‘ 19    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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@napari.org @jni.codes is a finalist in the @ardc.edu.au Eureka Prize for Excellence in Research Software.

Learn more: youtu.be/0g_MkTa_NwQ

#EurekaPrizes

30.07.2025 22:55 โ€” ๐Ÿ‘ 11    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

It's hard to express how much gratitude I have to everyone involved in the journey, both mine and @napari.org's, that has led to this point. #EurekaPrizes A small attempt below: ๐Ÿ‘‡

01.08.2025 07:29 โ€” ๐Ÿ‘ 33    ๐Ÿ” 15    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 1
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Self-supervised, label-free 3D cell imaging is here EPFL researchers introduce CellSeg3D, a self-supervised tool for 3D cell segmentation in fluorescence microscopy, eliminating the need for manual labeling and enhancing accessibility for various biolo...

๐Ÿฅฐ Self-supervised, label-free 3D cell imaging is here

Congrats to Cyril on this very cool first, first author publication ๐Ÿ†! This started when he was a bachelor's student (and he's now completing his masters!).

And many thanks to my other awesome co-authors๐Ÿ™

elifesciences.org/articles/99848

24.06.2025 17:53 โ€” ๐Ÿ‘ 102    ๐Ÿ” 31    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Indeed, the participants formed groups and implemented @napari.org plugins from scratch for tasks like pixel classification or cell tracking.

At the end, the groups did a live demo of their plugin ๐Ÿ’ป

I was super impressed! ๐Ÿฅณ

#NEUBIASPasteur2025

๐Ÿ“š Course materials: github.com/Image-Analys...

13.05.2025 10:33 โ€” ๐Ÿ‘ 24    ๐Ÿ” 9    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 1

This is so great! I glanced through the materials and was really wowed by what you put together!

Would love to chat more after the course about your experience teaching this and ways we might directly incorporate this into napari materials. Cheers!

13.05.2025 20:01 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

So excited and proud of everyone! ๐ŸŽ‰ With this release I worked very hard to contribute to napari and learned so much along the way. I guess they want to keep me around, as I'm a core dev now! ๐Ÿฅณ Grateful for the entire image analysis community. ๐Ÿฅฐ

01.05.2025 14:25 โ€” ๐Ÿ‘ 10    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
 Black fading to blue (left to right) flyer, 9 photos of individuals, white lettering on the top and bottom. Include BINA rainbow logo

Black fading to blue (left to right) flyer, 9 photos of individuals, white lettering on the top and bottom. Include BINA rainbow logo

#HappyFluorescenceFriday!

#microscopycommunity Join @bioimagingna.bsky.social Early Career WG for our Career Speaker Series on The BioImaging ToolBox: โ€œPre-nalysisโ€, Imaging, Analysis and Processingโ€ next Thursday , May 1

Learn More & Register here buff.ly/BHGomlc

25.04.2025 15:49 โ€” ๐Ÿ‘ 4    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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doctor strange says we 're in the endgame now in a movie scene Alt: Doctor Strange says "we're in the endgame now" in a scene from Avengers: Infinity War

napari 0.6.0rc0 is out! Barring any crazy bugs ๐Ÿ›, ๐Ÿ™ napari 0.6.0 should be out in a week, Apr 30.

23.04.2025 15:21 โ€” ๐Ÿ‘ 17    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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napari - scientific image viewer - YouTube napari (https://napari.org) is a fast, interactive viewer for multi-dimensional images in Python. Napari is a Python library for n-dimensional image visualis...

Are you using @napari.org or want to learn more? I've curated a list of videos about napari and its uses on YouTube. If I missed a video, please let me know. www.youtube.com/playlist?lis...

13.02.2025 17:11 โ€” ๐Ÿ‘ 16    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Very cool! How well does it preserve context and meaning? Would you be comfortable handing over gitbob-translated notebooks to someone in a different language, without being able to verify it's content?

29.11.2024 02:18 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Virtual I2K Flyer notifying that the Recordings are available on the I2K YouTube channel: https://www.youtube.com/@I2KConference

Virtual I2K Flyer notifying that the Recordings are available on the I2K YouTube channel: https://www.youtube.com/@I2KConference

Happy #MicroscopyMonday!

The recordings of the #Virtual #I2K2024 workshops are available now
tinyurl.com/VirtualI2K20...

Thanks to all who presented!

Please re-share! 2022 and 2023 content available too:
www.youtube.com/@I2KConference

25.11.2024 18:44 โ€” ๐Ÿ‘ 74    ๐Ÿ” 56    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 4

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