Although not a general benchmark, in my small test BioEmu did not detect a mutation-induced secondary structure shift. I saw similar results with other methods like MSA-subsampling. The BioEmu paper focused more on mutation-induced stability/unfolding.
15.08.2025 08:27 — 👍 0 🔁 0 💬 0 📌 0
Not at all. Please feel free to share it.
29.06.2025 22:09 — 👍 1 🔁 0 💬 0 📌 0
GitHub - mar4mn/ColabFlow: Colab-ready fork of Alphaflow with fixed OpenFold install
Colab-ready fork of Alphaflow with fixed OpenFold install - mar4mn/ColabFlow
I saw your post and was reminded that I wanted to uploaded my Colab integration of Alphaflow:
colab.research.google.com/github/mar4m...
15.06.2025 09:26 — 👍 0 🔁 0 💬 1 📌 0
Assistant Professor UAS at HES-SO Valais-Wallis 🇨🇭 🤗 HF Fellow. Working on AI, Protein Design and Open Science. Creator of bioicons.com
Starting Lab at GeneCenter (LMU Munich) and MPI of Biochemistry, Emmy Noether Programme, former postdoc @UWproteindesign
Biochemist at Bayreuth University, Germany, interested in protein evolution & design
PhD student at @HebrewU, working on SLIMs of the ubiqutin system. Member of @UbiMotif network, @RosettaCommons and @FurmanLab
PhD student from the Kalmbach Lab in Neuchâtel
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Our lab uses experimental and computational methods to design de novo proteins | @Stanford
Assistant Prof. at Leiden University Medical Center 🇳🇱 | Host-Defence | Structural biology | Single-molecule Biophysics | loefflab.com
Research Assistant Professor, National Institute of Chemistry, Baker lab @ UW alumni, MSCA alumni. http://ljubetic-lab.si
Proteins, evolutionary models, unsupervised learning. Prev: Research Scientist MetaAI, PhD Berkeley. he/him.
Group of Prof Sebastian Hiller. Structural Biology Research Group. Unravelling Biomolecular Mechanisms. (run by students)
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wankowiczlab.com
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Past: UCSF, Dana-Farber, Broad Institute, UMass Amherst
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Structural biologist working on 🖥️ protein design, machine learning🤖, crystallography💎, and cryoEM🔬. Avid weirdness connoisseur 🎩
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genetics/data/programming. ex-Hexagon, ex-Stanford ex-23andMe ex-TCD http://blog.booleanbiotech.com 🇮🇪
