A few months ago @eurobioimaging.bsky.social organized the 'Image Data Community Days 2025' during which I could present our work within @france-bioimaging.bsky.social, creating a nationwide, remotely operating core facility for Bioimage Analysis.

youtu.be/xtLHiio8RF0?...

05.08.2025 12:21 — 👍 22    🔁 6    💬 1    📌 0

I just published a new video demonstrating how to use Pixi and Napari-Easy-Augment-Batch-DL for repeatable and reproducible deep learning segmentation. In this example, I use Pixi to set up a Python environment then launch Napari to explore and compare Cellpose3 and Micro-SAM. youtu.be/3ObAnSTBri8

30.07.2025 17:31 — 👍 14    🔁 7    💬 0    📌 0

GloBIAS: strengthening the foundations of BioImage Analysis There is a global need for BioImage Analysis (BIA) as advances in life sciences increasingly rely on cutting-edge imaging systems that have dramatically expanded the complexity and dimensionality of b...

Preprint alert! Want to hear more about the coolest new society on the block? You should check out our new preprint discussing @globias.bsky.social ! Hop into 🧵 for a couple quick highlights (1/x):

10.07.2025 22:22 — 👍 30    🔁 12    💬 1    📌 3

Optical Microscopy Support Specialist | John Innes Centre An exciting opportunity has arisen for an Optical Microscopy Support Specialist to join the Bioimaging Platform at the John Innes Centre.

VACANCY - We’re seeking an Optical Microscopy Support Specialist to join our Bioimaging Platform, to help train users on light microscopes, collaborate on imaging projects and provide technical support.

www.jic.ac.uk/vacancies/op...

Closing date - 11 August 2025
Contract - Full time, indefinite

15.07.2025 17:51 — 👍 12    🔁 18    💬 0    📌 2

Yes same LEDs that we had in Marseille! Looking forward 🤩

20.06.2025 15:06 — 👍 1    🔁 0    💬 0    📌 0

F-BIAS: Towards a distributed national core facility for bioimage analysis † Author summary We describe our experience in creating a nationwide core facility offering services in bioimage analysis. This virtual facility federates existing resources scattered across the territo...

Our paper describing the creation of a nationwide core facility for bioimage analysis if out in @plos Computational Biology!
🎉✌️

journals.plos.org/ploscompbiol...

So happy about this paper and how the work turned out.
A small thread 👇

#bioimageanalysis #corefacility

11.06.2025 08:29 — 👍 67    🔁 22    💬 3    📌 3

Ad for the Bioimage Analysis Beginnings Bootcamp at the Broad Institute. Where & When Broad Institute, 415 Main Street, Cambridge MA (in-person only) Monday–Friday, August 4–8, 20259:00 AM – 5:00 PM About the Bootcamp Learn core bioimage analysis skills using open-source tools for light microscopy in this hands-on, in-person course. The Bootcamp covers annotation, segmentation, and deep learning fundamentals. Fee: $600 (Academic/Non-Profit) | $1000 (Industry/For-Profit) For more information email ImagingAdmin@broadinstitute.org

BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...

01.05.2025 21:22 — 👍 62    🔁 41    💬 0    📌 4

The FIRST GloBIAS conference is happening in Kobe, Japan, and we launched the webpage and the registration form. Training school, Hackathon, Taggathon, and Symposium with talks, posters, open-source software lounge, call-4-help on stage!

#BioimageAnalysis
#GloBIAS

16.04.2025 19:53 — 👍 9    🔁 3    💬 1    📌 0

GloBIAS #BioimageAnalysis #Conference 2025 – we have opened the registration for our 2025 in-person event. Please check the webpage www.globias.org/activities/b... for more information and the link to the registration form.

16.04.2025 19:40 — 👍 24    🔁 19    💬 0    📌 4

I tricked ChatGPT into helping me create an #ImageJ macro language extension to create/process data in the XML format. It's available here for anyone to use: github.com/mutterer/XML...

31.03.2025 12:09 — 👍 9    🔁 3    💬 1    📌 0

Thank you @gerbi-gmb.de for a wonderful week 💚🔬!

24.03.2025 10:08 — 👍 6    🔁 0    💬 0    📌 0

2 - New support for NGFF images (OME-Zarr, N5, remote or local)

The support for tracking remote images have been completely reworked, based on the N5-universe codebase by @herrsaalfeld.bsky.social lab, with a custom caching strategy.

30.01.2025 16:44 — 👍 10    🔁 2    💬 1    📌 0

Image analysis associate job description Image Analysis Associate Broad Institute of MIT and Harvard, Cambridge, MA Impact the discovery of new disease therapies in the Cimini laboratory at the Imaging Platform Join our vibrant, world-clas...

New Year, new job? Delighted to announce two early-career-level (post-BA/BS or MA) positions in my lab, and an open call for computational postdocs at the Broad!

First, an image analysis associate - work on high content screens for all kinds of cells and dimensionalities! See more at link (1/4)

16.12.2024 15:20 — 👍 47    🔁 35    💬 2    📌 8

Aïe-ku

15.12.2024 10:00 — 👍 1    🔁 0    💬 0    📌 0

🌟We are looking for a new member of our image analysis team at the Imaging Core Facility of the Biozentrum in Basel 🌟
Are you passionate about science and technology? Are you interested in bioimaging? Please check the job ad below
#JobOpportunity #ImageAnalysis #DeepLearning
@biozentrum.bsky.social

13.12.2024 10:15 — 👍 23    🔁 21    💬 1    📌 1

Anticipated flood of data of 1.16Gb per day!

04.12.2024 06:32 — 👍 4    🔁 0    💬 0    📌 0

My first post here to share the important fact that turtle shells can be used to create a wonderful digit font.

02.12.2024 18:55 — 👍 7    🔁 0    💬 1    📌 0