Goran LAKISIC

🎓 My team is seeking a PhD student in Biochemistry & Cell Biology at I2BC, Paris-Saclay!
🔬 Study cytoskeletal signaling in collective cell migration
🌍 Fully funded, 3 yrs | 📍 Gif-sur-Yvette, France
🗓️ Apply by Aug 22 via the following link:
emploi.cnrs.fr/Offres/Docto...

Interested in lysosome damage and repair pathways? Check out the latest updates.

Exciting fundamental discovery!

Early embryos fight bacteria WITHOUT immune cells

Zebrafish, mouse, and human embryos use epithelial cells (trophoectoderm)—not immune cells—to engulf and destroy 𝘌. 𝘤𝘰𝘭𝘪 and 𝘚. 𝘢𝘶𝘳𝘦𝘶𝘴

Hoijman Lab Barcelona 🇪🇸
𝘊𝘦𝘭𝘭 𝘏𝘰𝘴𝘵 𝘔𝘪𝘤𝘳𝘰𝘣𝘦

www.sciencedirect.com/science/arti...

Visuel du studio Ghibli sur un fond bleu ciel. Le nom du studio est écrit en japonais et en anglais. Sur le dessin, on peut voir Totoro, de profil, le regard tourné vers la gauche.

La beauté de Ghibli, ça ne s'imite pas ! 🍃

Plus de vingt films du studio d'animation mythique, garantis sans IA, arrivent bientôt (et gratuitement) sur nos antennes et france.tv.

Accurate cell segmentation in ST data faces challenges like overlapping cells, transcript diffusion, background noise, and missing nuclei. Conservative assignments may over-segment cells, while under-segmentation leads to false positives that contaminate profiles. Effective segmentation must balance splitting cells and merging multiple cells.

2/ If you’ve worked with Spatial Transcriptomics (ST) data, you’ve indeed had some troubles with segmentation accuracy. Segmentation problems mess up downstream analysis & obscure cell-cell interactions - which are ST’s biggest promises. #segger

Do you LOVE organelles??
Well I am THRILLED to announce that Nellie has been published in @naturemethods.bsky.social!

Nellie a fully automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D, 3D, timelapse, multichannel live-cell microscopy

🧵1/N

Brave browser? Has built-in ad blocker and is open source.

Les webinaires de l'enseignement "Comment notre vie prénatale influence-t-elle notre santé future ?" le 5 mars 2025 à 14h via zoom avec Anne Gabory qui travaille à l'INRAE. inscription nécessaire.

🧬 Comment notre vie prénatale influence-t-elle notre santé future ?
👩‍💻 Participez au webinaire avec Anne Gabory, chercheuse à l’INRAE dans le laboratoire « Biologie de la Reproduction, Environnement, Epigénétique et Développement »
🔗 Inscrivez-vous ici : bit.ly/WebinaireEns...
@pasteur.fr

Thrilled to share MyoFuse, an AI-based workflow for automated skeletal muscle cell fusion quantification! 🥳

This is a collaboration with Benjamin Lair and Cedric Moro (I2MC, Toulouse), improving the Fusion Index (FI) measurement.

Preprint: www.biorxiv.org/content/10.1...

#AI #Svetlana #Myofuse

Prof. Kelly Rogers delivers a wonderful tribute to Spencer Shorte at #APMC13 #ACMM28. Spencer Shorte was a huge advocate for core imaging facilities & has contributed enormously to the microscopy community around the world. He was known & well-respected by many @australianmms.bsky.social members.

#Communiqué 🗞️ Vous avez travaillé au CNRS ? Rejoignez #CNRSalumni, le réseau pour toutes celles et tous ceux qui ont eu une expérience professionnelle au CNRS, qu’ils soient désormais en mobilité ou partis vers d’autres sphères professionnelles en France ou l’étranger.
👉 www.cnrs.fr/fr/presse/le...

And to start 2025 strong… Our work #NanoPyx is out in Nature Methods 😍❤️ DOI: doi.org/10.1038/s415...
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️

What's the refractive index of the oil? 🙃

C'est aujourd'hui que sort chez @dargaud.com cette beauté de 144 pages en 24x34 : COMPULSION, une novella d'Adam Roberts, traduite par votre serviteuse et magnifiquement illustrée par le grand François Schuiten.

Pasteur courses

Do you want to learn light microscopy?

The registration for the Pasteur course 'Principles and Applications of Fluorescence Microscopy' in March 2025 are open!!

pasteur.fr/en/pafm
10 March – 21 March 2025

plz RT! #PAFM is back after a two-year break 🤩🌈🔬🪛

👇thread

Deconvolutional Neural Network 🤔

Pendulum remix is really 👍 too

🚀 If you're passionate about Open Source in Bio, check out #ShareYourCloning! 🧬✨ It's a web app to plan and document molecular cloning & genetic engineering.
We're looking for contributors and testers – every bit helps! 🙌🔬

🔗 try it: shareyourcloning.org
🎞️ demo: www.youtube.com/watch?v=n0he...

ORCiD profile screenshot

Reminder to update the "social links" in your ORCiD profile with your Bluesky handle:

The #biovoxxel figure tools provide a convenient way in saving SVG vector graphic from Fiji and create publication figures in Inkscape.
Thanks to Ved Sharma those SVGs can now also be opened in the browser and even in Adobe Illustrator, if you really have to use it (I won't blame you 😉)

go.bsky.app/2zGz8ot

Autophagy Starter Pack - for those interested in autophagy (macro, micro and CMA), lysosomes and late endosomes! Let’s join hands to degrade the trash 😃

A foundation model for joint segmentation, detection and recognition of biomedical objects across nine modalities - Nature Methods BiomedParse is a foundation model for image analysis that uses a joint learning approach to jointly conduct segmentation, detection and recognition and offer state-of-the-art performance across a wide...

New in Nature Methods from Wei, Poon, and Wang: BiomedParse, a biomedical foundation model that can jointly conduct segmentation, detection and recognition across nine imaging modalities. www.nature.com/articles/s41...

Action Intent Links | Bluesky Authors, websites, and apps can use action intent links to implement "Share on Bluesky" buttons, or similar in-app actions. Logged-in users will be directed to the corresponding action view in the Blu...

We strongly suggest that academic publishers and other platforms that host research rapidly implement a Share to Bluesky button for their articles. Here's how:

docs.bsky.app/docs/advance...

#AcademicSky #HigherEd #Altmetrics

GitHub - biovoxxel/BioVoxxel-Figure-Tools Contribute to biovoxxel/BioVoxxel-Figure-Tools development by creating an account on GitHub.

#BIAToolTip No.3
In this thread I will introduce several of the #biovoxxel figure tools for Fiji that allow you to prepare images for scientific figures in line with GSP and preserving image quality as well as data integrity 100%
github.com/biovoxxel/Bi...

#BIAToolTip No.2
Today, I would like to highlight the amazing IJ-wrapper 😎 for cellpose, omnipose and StarDist and more from
@romainguiet.bsky.social
and colleagues. It allows seamless integration of DL tools in a Fiji batch workflow including all imgae pre- and post-processing and analysis steps.

👍🤗

Congratulations Christophe! (& Alexis)🤗👍

Advanced methods in bioimage analysis 14 to 19 of september 2025

Save the date... our 3rd edition, 2nd hybrid, of this course tailored to bio image analysts. Further info to come soon.

Hi, May I join if possible? Thanks

Hi Robert!
Great initiative👍!
May I join the party too?
🤗🤗