JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models
Abstract. JASPAR (https://jaspar.elixir.no/) is an open-access database that has provided high-quality, manually curated, and non-redundant DNA binding pro
From @damlaob.bsky.social & colleagues in @narjournal.bsky.social #NARDatabaseIssue | #JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models | #Bioinformatics #Genomics #Database #OpenScience #TFBS 🧬 🖥️🧪🔓
⬇️
academic.oup.com/nar/advance-...
02.12.2025 13:25 — 👍 12 🔁 6 💬 0 📌 0
Proud of JASPAR 2026 release with major expansion of PFM profiles and a new collection of deep learning models interpreted to extract learnt motifs!
Work led by @ievarau.bsky.social and @damlaob.bsky.social w/ @anshulkundaje.bsky.social @wywywa.bsky.social @flowerwhatelse.bsky.social labs & more
02.12.2025 07:53 — 👍 5 🔁 3 💬 0 📌 0
Our own Damla @damlaob.bsky.social making a great presentation of the upcoming updates of JASPAR and UniBind with BPnet DL models at #RegSys @iscb-regsys.bsky.social #ISMBECCB2025
Chat with her at her poster D-485.
23.07.2025 11:55 — 👍 10 🔁 2 💬 1 📌 0
Eagerly waiting for the start of #ISMBECCB2025 with @croage.bsky.social team, @kkajan.bsky.social, Marta and Ira, with the great company of @damlaob.bsky.social and @ferenckata.bsky.social for a keynote talk from John Jumper 🧬🔬
20.07.2025 17:33 — 👍 7 🔁 4 💬 0 📌 0
I'm participating the ISMB/ECCB 2025 conference, join me!
Register now
I'm attending #ISMBECCB2025 in Liverpool, United Kingdom from July 20-24. I’ll be giving a flash talk and presenting a poster. If you’re interested in how we’re expanding #JASPARDB with deep learning, come visit my poster!
20.07.2025 05:30 — 👍 2 🔁 0 💬 0 📌 0
Celebrate #DNADay by building paper models of DNA from PDB-101
pdb101.rcsb.org/lear...
25.04.2025 19:03 — 👍 7 🔁 2 💬 0 📌 0
💡 Our very own postdoc, @damlaob.bsky.social from @amathelier.bsky.social's group, has shared her thoughts on how collaborations between experimental and computational scientists can help solving health-related issues during the 5th @embl.org Partnership conference AI in One Health.
📜 Read more 👇!
23.04.2025 11:32 — 👍 5 🔁 2 💬 0 📌 0
I have presented my poster today at the 5th EMBL Partnership Conference #EMBLAIOneHealth! It’s been a great experience sharing my work and engaging with brilliant minds. Looking forward to the insightful talks tomorrow and on Wednesday! @embl.org @nordicembl.bsky.social @ncmbm.bsky.social
31.03.2025 18:56 — 👍 7 🔁 1 💬 0 📌 0
AI in one health
Very much looking forward to attending the AI in one health conference at @embl.org with our EMBL partners @nordicembl.bsky.social
www.embl.org/about/info/c...
31.03.2025 09:28 — 👍 3 🔁 2 💬 0 📌 1
A career network featuring science jobs in academia and industry.
Visit our platform at www.science.hr
Bioinformatics 🧬🖥️🧪
#PLOS Comp Biol Education Sect. Editor;
#DATABASE OUP Associate Editor;
#OpenScience #OpenAccess #OpenData;
friend of @jxtxfoundation.bsky.social,
@abinstitute.bsky.social
- I am 🇨🇦
Nucleic Acids Research (NAR), from Oxford University Press, publishes the results of leading-edge research into physical, chemical, biochemical and biological aspects of nucleic acids and proteins involved in nucleic acid metabolism and/or interactions
Group Leader @ BIH Berlin and MPI Molecular Genetics. I play around with DNA because I‘d like to know how the genome functions.
Data Scientist Generative AI @BayerCropScience. ML for Plant Biology. PhD @IowaStateUniversity https://www.linkedin.com/in/koushik-nagasubramanian/
CMU-Pitt Computational Biology PhD Candidate
Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Computational methods for epigenetic, CRISPR genome editing and single-cell genomics. Associate Professor at MGH / Harvard Medical School. http://pinellolab.org
Dad x 2, husband, son, brother, computational biologist, genome scientist, associate professor at la jolla institute for immunology (LJI) and UCSD https://www.lji.org/labs/ay/
Cancer Research Center of Toulouse and Barcelona Supercomputing Center. Interested in networks, heterogeneity and genome architecture. crct-inserm.fr/en/netbio2_en/
YoungPI Regulatory Genomics
@LIIGH_UNAM
@RSATools devel
CV: Postdoc
@SickKidsNews @DLSPH_STAGE
PhD @ccg_unam
Bachelor @lcgunam.
Studying gene regulation and transcription factor binding with machine learning. Assoc Prof at Penn State. 🇮🇪
🇨🇴 #EvoDevo PostDoc in the constant *Job-Hunting in EU*
Single-cell-omics & other-omics
Opinions are only my own
#embryo2019
Github: dasalam42
Mastodon: @drsalamander@genomic.social
Twitter: @DrSalamander
https://evobioseries.com/#episode-14
Director of Institute for Computational Genomic Medicine at Goethe University Frankfurt https://cgm.uni-frankfurt.de/
Empowering Computational Biology, Transforming Global Science!
The International Society for Computational Biology is a scholarly society for advancing understanding of living systems through computation, and communicating scientific advances worldwide.
💻 We are the Structural Bioinformatics and Computational Biology track of the International Society for Computational Biology (ISCB)
biomedical data science PhD student at University of Oslo
Senior Group Leader at Josep Carreras Institute.
Chromatin; Nucleal metabolism; Leukemia; MDS; Drug Targets; Histone variants.
Posting about the lab and the wider scientific community.
More info about us here: www.buschbecklab.org